Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002546-TA|BGIBMGA002546-PA|IPR000181|Formylmethionine
deformylase
(177 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E48B64 Cluster: PREDICTED: hypothetical protein;... 96 3e-19
UniRef50_UPI0000D573B0 Cluster: PREDICTED: similar to CG31278-PA... 92 8e-18
UniRef50_Q9VGY2 Cluster: CG31278-PA; n=5; Diptera|Rep: CG31278-P... 91 2e-17
UniRef50_Q4V5F8 Cluster: IP07194p; n=2; Drosophila melanogaster|... 80 2e-14
UniRef50_Q4V8U4 Cluster: Zgc:114141; n=1; Danio rerio|Rep: Zgc:1... 78 1e-13
UniRef50_Q9HBH1 Cluster: Peptide deformylase, mitochondrial prec... 67 2e-10
UniRef50_A7P7U0 Cluster: Chromosome chr9 scaffold_7, whole genom... 64 2e-09
UniRef50_UPI000051A696 Cluster: PREDICTED: similar to CG31373-PA... 63 3e-09
UniRef50_Q6DIL5 Cluster: Peptide deformylase like protein; n=2; ... 61 2e-08
UniRef50_Q1IJN4 Cluster: Peptide deformylase; n=1; Acidobacteria... 60 4e-08
UniRef50_Q7NJV3 Cluster: Peptide deformylase 1; n=5; Bacteria|Re... 59 5e-08
UniRef50_P96113 Cluster: Peptide deformylase; n=6; Thermotogales... 58 1e-07
UniRef50_A0LUE1 Cluster: Peptide deformylase; n=5; Actinomycetal... 58 1e-07
UniRef50_Q93LE9 Cluster: Peptide deformylase; n=4; Leptospira|Re... 56 3e-07
UniRef50_Q73M64 Cluster: Polypeptide deformylase; n=1; Treponema... 56 5e-07
UniRef50_UPI0001554B2E Cluster: PREDICTED: similar to bromodomai... 55 1e-06
UniRef50_A2SPW1 Cluster: Peptide deformylase; n=1; Methanocorpus... 54 2e-06
UniRef50_Q8GDQ9 Cluster: Polypeptide deformylase; n=1; Heliobaci... 53 3e-06
UniRef50_A1SJG1 Cluster: Peptide deformylase; n=7; Actinomycetal... 53 3e-06
UniRef50_Q8XJX0 Cluster: Peptide deformylase 2; n=3; Clostridium... 52 6e-06
UniRef50_Q2JXI3 Cluster: Peptide deformylase; n=2; Synechococcus... 52 1e-05
UniRef50_Q28V79 Cluster: Peptide deformylase; n=16; Proteobacter... 52 1e-05
UniRef50_Q9RD27 Cluster: Peptide deformylase 1; n=2; Actinomycet... 51 1e-05
UniRef50_A7SK78 Cluster: Predicted protein; n=1; Nematostella ve... 50 2e-05
UniRef50_O83738 Cluster: Peptide deformylase; n=1; Treponema pal... 50 4e-05
UniRef50_A4RSE7 Cluster: Peptide deformylase, mitochondrial; n=2... 48 9e-05
UniRef50_Q2HVV8 Cluster: Formylmethionine deformylase; n=2; Medi... 48 1e-04
UniRef50_Q3Y199 Cluster: Peptide deformylase; n=1; Enterococcus ... 48 2e-04
UniRef50_A3EQF2 Cluster: Peptide deformylase; n=1; Leptospirillu... 48 2e-04
UniRef50_Q825U9 Cluster: Peptide deformylase 3; n=3; Actinomycet... 48 2e-04
UniRef50_Q6LQG3 Cluster: Hypothetical polypeptide deformylase; n... 47 3e-04
UniRef50_Q8KCG7 Cluster: Peptide deformylase; n=10; Chlorobiacea... 47 3e-04
UniRef50_Q2LWW1 Cluster: Peptide deformylase; n=1; Syntrophus ac... 46 5e-04
UniRef50_Q7MT07 Cluster: Peptide deformylase; n=26; cellular org... 46 5e-04
UniRef50_P73441 Cluster: Peptide deformylase; n=6; Cyanobacteria... 46 6e-04
UniRef50_A0Q116 Cluster: Peptide deformylase; n=8; Clostridium|R... 45 9e-04
UniRef50_Q2J552 Cluster: Peptide deformylase; n=2; Frankia|Rep: ... 45 0.001
UniRef50_Q2Z018 Cluster: Polypeptide deformylase; n=1; unculture... 45 0.001
UniRef50_A6DUA1 Cluster: Peptide deformylase; n=1; Lentisphaera ... 45 0.001
UniRef50_Q74GW5 Cluster: Polypeptide deformylase; n=8; Proteobac... 44 0.001
UniRef50_Q5FUM9 Cluster: Polypeptide deformylase; n=4; Alphaprot... 44 0.001
UniRef50_A7BDR6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_A1AZR4 Cluster: Peptide deformylase; n=1; Paracoccus de... 44 0.002
UniRef50_Q9Z6J2 Cluster: Peptide deformylase; n=9; Chlamydiaceae... 44 0.002
UniRef50_Q9FV53 Cluster: Peptide deformylase, mitochondrial prec... 44 0.002
UniRef50_Q8REF0 Cluster: Peptide deformylase; n=3; Fusobacterium... 44 0.003
UniRef50_O51092 Cluster: Peptide deformylase; n=4; Borrelia|Rep:... 44 0.003
UniRef50_Q5LNI5 Cluster: Peptide deformylase; n=2; Alphaproteoba... 43 0.003
UniRef50_A0YLK8 Cluster: Polypeptide deformylase; n=2; Bacteria|... 43 0.003
UniRef50_A2SPY2 Cluster: Formylmethionine deformylase; n=1; Meth... 43 0.003
UniRef50_A6L9R8 Cluster: Peptide deformylase; n=2; Parabacteroid... 43 0.003
UniRef50_Q8YVH1 Cluster: Peptide deformylase 2; n=9; Bacteria|Re... 43 0.003
UniRef50_Q9RRQ4 Cluster: Peptide deformylase; n=5; Deinococci|Re... 43 0.005
UniRef50_Q8DDE3 Cluster: Peptide deformylase 1; n=15; Gammaprote... 43 0.005
UniRef50_A7FWQ4 Cluster: Peptide deformylase; n=4; Clostridium b... 42 0.006
UniRef50_Q54JC1 Cluster: Putative uncharacterized protein; n=1; ... 42 0.006
UniRef50_Q8G534 Cluster: Peptide deformylase 1; n=3; Bifidobacte... 42 0.008
UniRef50_A0JX03 Cluster: Peptide deformylase; n=1; Arthrobacter ... 41 0.014
UniRef50_Q7UHZ5 Cluster: Peptide deformylase; n=2; Planctomyceta... 41 0.014
UniRef50_Q9CBI2 Cluster: Peptide deformylase; n=28; Actinomyceta... 41 0.014
UniRef50_Q97G95 Cluster: Peptide deformylase 2; n=9; Clostridial... 41 0.014
UniRef50_A0PZC9 Cluster: Peptide deformylase; n=1; Clostridium n... 41 0.018
UniRef50_Q2S316 Cluster: Peptide deformylase; n=1; Salinibacter ... 41 0.018
UniRef50_A1G4Y1 Cluster: Transcriptional regulator, XRE family; ... 40 0.024
UniRef50_Q8XZJ6 Cluster: Peptide deformylase 2; n=47; Proteobact... 40 0.024
UniRef50_Q82TW4 Cluster: Peptide deformylase 1; n=11; Betaproteo... 40 0.032
UniRef50_O05100 Cluster: Peptide deformylase 1; n=5; Clostridial... 40 0.032
UniRef50_Q5ZXW6 Cluster: Polypeptide deformylase; n=3; Legionell... 40 0.043
UniRef50_Q7V8G6 Cluster: Peptide deformylase 1; n=26; Bacteria|R... 40 0.043
UniRef50_A3V198 Cluster: Peptide deformylase; n=12; Rhodobactera... 39 0.056
UniRef50_Q5FPX1 Cluster: Peptide deformylase; n=4; Bacteria|Rep:... 39 0.074
UniRef50_A4AGB1 Cluster: Polypeptide deformylase; n=3; Actinobac... 39 0.074
UniRef50_Q83GH8 Cluster: Peptide deformylase; n=2; Tropheryma wh... 39 0.074
UniRef50_Q9ZDV8 Cluster: Peptide deformylase; n=11; Rickettsieae... 39 0.074
UniRef50_Q4FVQ4 Cluster: Peptide deformylase; n=113; Proteobacte... 39 0.074
UniRef50_O66847 Cluster: Peptide deformylase; n=1; Aquifex aeoli... 39 0.074
UniRef50_P94462 Cluster: Peptide deformylase 1; n=28; Firmicutes... 39 0.074
UniRef50_Q67PR5 Cluster: Peptide deformylase; n=17; Bacteria|Rep... 38 0.098
UniRef50_Q7VED2 Cluster: Peptide deformylase; n=30; Cyanobacteri... 38 0.098
UniRef50_Q6AQ98 Cluster: Peptide deformylase; n=1; Desulfotalea ... 38 0.098
UniRef50_Q9FUZ2 Cluster: Peptide deformylase, chloroplast precur... 38 0.098
UniRef50_Q92JI7 Cluster: Peptide deformylase 2; n=5; spotted fev... 38 0.098
UniRef50_Q1Q7Q2 Cluster: Strongly similar to peptide deformylase... 38 0.13
UniRef50_Q1MQA6 Cluster: Peptide deformylase; n=4; Desulfovibrio... 38 0.13
UniRef50_A6PRT7 Cluster: Peptide deformylase; n=1; Victivallis v... 38 0.13
UniRef50_A5IFI4 Cluster: Polypeptide deformylase; n=4; Legionell... 38 0.13
UniRef50_Q8I372 Cluster: Formylmethionine deformylase, putative;... 38 0.13
UniRef50_Q5DFX2 Cluster: SJCHGC05617 protein; n=1; Schistosoma j... 38 0.13
UniRef50_A0DLN6 Cluster: Chromosome undetermined scaffold_556, w... 38 0.13
UniRef50_P63919 Cluster: Peptide deformylase-like; n=12; Rhizobi... 38 0.13
UniRef50_Q87I22 Cluster: Peptide deformylase 2; n=40; Gammaprote... 38 0.17
UniRef50_Q1GDF5 Cluster: Peptide deformylase; n=7; Rhodobacterac... 37 0.23
UniRef50_Q2GE16 Cluster: Peptide deformylase; n=6; Rickettsiales... 37 0.23
UniRef50_Q2NCT3 Cluster: Peptide deformylase; n=4; Sphingomonada... 37 0.23
UniRef50_Q746R2 Cluster: Polypeptide deformylase; n=9; Desulfuro... 37 0.30
UniRef50_Q1NTV0 Cluster: Peptide deformylase; n=5; Proteobacteri... 37 0.30
UniRef50_A0Z0D3 Cluster: Peptide deformylase; n=1; Lyngbya sp. P... 37 0.30
UniRef50_A0Q456 Cluster: Peptide deformylase; n=11; Francisella ... 37 0.30
UniRef50_Q82TC8 Cluster: Peptide deformylase 2; n=134; Bacteria|... 37 0.30
UniRef50_Q74HB5 Cluster: Polypeptide deformylase; n=7; Firmicute... 36 0.40
UniRef50_Q15Q99 Cluster: Peptide deformylase; n=1; Pseudoalterom... 36 0.40
UniRef50_A0LDD7 Cluster: Peptide deformylase; n=2; Proteobacteri... 36 0.40
UniRef50_Q74JW2 Cluster: Peptide deformylase; n=6; Lactobacillal... 36 0.40
UniRef50_Q5LNI7 Cluster: Peptide deformylase; n=14; Alphaproteob... 36 0.52
UniRef50_Q38EE2 Cluster: Metalloprotease-like protein; n=6; Tryp... 36 0.52
UniRef50_Q6FDC9 Cluster: Peptide deformylase; n=1; Acinetobacter... 36 0.69
UniRef50_Q1RIR7 Cluster: Polypeptide deformylase; n=2; Rickettsi... 36 0.69
UniRef50_Q8FT51 Cluster: Peptide deformylase 1; n=6; Actinobacte... 36 0.69
UniRef50_UPI0000519BDE Cluster: PREDICTED: similar to integrator... 35 0.92
UniRef50_A3EQQ7 Cluster: Peptide deformylase; n=1; Leptospirillu... 35 0.92
UniRef50_A4RVA1 Cluster: Peptide deformylase, organellar; n=2; O... 35 0.92
UniRef50_Q9K4A0 Cluster: Peptide deformylase 4; n=2; Streptomyce... 35 0.92
UniRef50_Q2J9M0 Cluster: Peptide deformylase; n=1; Frankia sp. C... 35 1.2
UniRef50_A6G3Q1 Cluster: Putative polypeptide deformylase protei... 35 1.2
UniRef50_A4GJ38 Cluster: Peptide deformylase; n=1; uncultured Ni... 35 1.2
UniRef50_Q83AK6 Cluster: Peptide deformylase 2; n=3; Coxiella bu... 35 1.2
UniRef50_A7H8D4 Cluster: Peptide deformylase; n=5; Bacteria|Rep:... 34 1.6
UniRef50_A6C970 Cluster: Peptide deformylase; n=1; Planctomyces ... 34 1.6
UniRef50_P63913 Cluster: Peptide deformylase; n=48; Alphaproteob... 34 1.6
UniRef50_Q5GTG9 Cluster: Peptide deformylase; n=1; Wolbachia end... 34 2.1
UniRef50_Q8G487 Cluster: Peptide deformylase 2; n=4; Actinobacte... 34 2.1
UniRef50_Q6MJL6 Cluster: Polypeptide deformylase; n=1; Bdellovib... 33 2.8
UniRef50_Q0F0I6 Cluster: Peptide deformylase; n=1; Mariprofundus... 33 2.8
UniRef50_A6W503 Cluster: Peptide deformylase; n=1; Kineococcus r... 33 2.8
UniRef50_A6CAH7 Cluster: Putative uncharacterized protein; n=1; ... 33 2.8
UniRef50_Q92HU7 Cluster: Peptide deformylase-like; n=5; Ricketts... 33 2.8
UniRef50_Q47M56 Cluster: Peptide deformylase; n=7; Bacteria|Rep:... 33 3.7
UniRef50_Q0EWE9 Cluster: Polypeptide deformylase; n=1; Mariprofu... 33 3.7
UniRef50_A4EF54 Cluster: Peptide deformylase; n=2; Rhodobacterac... 33 3.7
UniRef50_A5FVG7 Cluster: Peptide deformylase; n=1; Acidiphilium ... 32 6.5
UniRef50_A3XHJ5 Cluster: Putative polypeptide deformylase protei... 32 6.5
UniRef50_A3M399 Cluster: Peptide deformylase 2; n=1; Acinetobact... 32 6.5
UniRef50_A3I5Q3 Cluster: Peptide deformylase; n=3; Firmicutes|Re... 32 6.5
UniRef50_Q7XYP8 Cluster: Peptide deformylase; n=1; Bigelowiella ... 32 6.5
UniRef50_Q8II31 Cluster: Putative uncharacterized protein; n=4; ... 32 6.5
UniRef50_Q7QUP0 Cluster: GLP_47_33632_31947; n=1; Giardia lambli... 32 6.5
UniRef50_Q98PN3 Cluster: Peptide deformylase; n=5; Mycoplasma|Re... 32 6.5
UniRef50_Q1QTJ5 Cluster: Peptide deformylase; n=9; Proteobacteri... 32 6.5
UniRef50_Q4S9Q3 Cluster: Chromosome 2 SCAF14695, whole genome sh... 32 8.5
UniRef50_Q8JKR5 Cluster: P91 capsid protein; n=1; Heliothis zea ... 32 8.5
UniRef50_Q5PBF5 Cluster: Peptide deformylase; n=7; Anaplasmatace... 32 8.5
UniRef50_Q40J94 Cluster: Peptide deformylase; n=8; Anaplasmatace... 32 8.5
UniRef50_A6Q676 Cluster: Peptide deformylase; n=1; Sulfurovum sp... 32 8.5
UniRef50_A5US58 Cluster: Peptide deformylase; n=4; Chloroflexace... 32 8.5
UniRef50_A3HVV2 Cluster: Peptide deformylase; n=1; Algoriphagus ... 32 8.5
UniRef50_A1WWW4 Cluster: Peptide deformylase; n=1; Halorhodospir... 32 8.5
>UniRef50_UPI0000E48B64 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 186
Score = 96.3 bits (229), Expect = 3e-19
Identities = 47/97 (48%), Positives = 63/97 (64%)
Query: 20 VSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGV 79
++ PPYNHV QVGDP LR S+PV ++I+TKE Q LI K+ VM K VG++APQIGV
Sbjct: 1 MATPPYNHVTQVGDPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGV 60
Query: 80 NMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
++FVM+ + + I K+R MEV+P V N
Sbjct: 61 AQQVFVMEFTEKHMKGFSEEIQKAREMEVVPLKVFVN 97
Score = 47.2 bits (107), Expect = 2e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
NE G P + + AR+ QHE +HL G LY+D MD +T + + W + N
Sbjct: 136 NEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRMDTRTFADLQWPQWN 184
>UniRef50_UPI0000D573B0 Cluster: PREDICTED: similar to CG31278-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG31278-PA - Tribolium castaneum
Length = 223
Score = 91.9 bits (218), Expect = 8e-18
Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 5 RKILNWYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVM 64
++I++WY+ L K P+ HVVQ+GDPTLR VS+ +P + IK EI+ LI +++ VM
Sbjct: 13 KRIISWYSGLV-KAKPPEAPFKHVVQIGDPTLRTVSDVIPRDLIKLPEIKFLINRMKNVM 71
Query: 65 NKYKSVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
+ SVG+SAPQ+GV +++F+++ N L K + M+V+PF V N
Sbjct: 72 KNHNSVGLSAPQVGVPLQLFLVECNAKHLNEYSPQEQKVKEMKVVPFKVVIN 123
Score = 78.6 bits (185), Expect = 8e-14
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKLAIPF 174
++E+ W AR+ QHE++HL+GK+Y DIMDRK+++C CW+E+N GK+ +P+
Sbjct: 161 FDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDRKSLACSCWQEINERGGKIELPY 220
Query: 175 SPE 177
P+
Sbjct: 221 GPQ 223
>UniRef50_Q9VGY2 Cluster: CG31278-PA; n=5; Diptera|Rep: CG31278-PA -
Drosophila melanogaster (Fruit fly)
Length = 238
Score = 90.6 bits (215), Expect = 2e-17
Identities = 40/107 (37%), Positives = 66/107 (61%)
Query: 10 WYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKS 69
WY L +LPPYNH Q+GDP LR+ + VP E++ + EI+ ++ ++ V+ K+
Sbjct: 33 WYQHLWTTERTNLPPYNHFTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDC 92
Query: 70 VGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
VG++APQIGV++RI M+ +P+A+ ++R M +P T+ N
Sbjct: 93 VGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFIN 139
Score = 76.6 bits (180), Expect = 3e-13
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKLAIPF 174
GN + W AR+AQHE++HL+GKLY D MDR T +C CWE VN G++ IPF
Sbjct: 181 GNQSELALSGWNARIAQHEMDHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPF 236
>UniRef50_Q4V5F8 Cluster: IP07194p; n=2; Drosophila
melanogaster|Rep: IP07194p - Drosophila melanogaster
(Fruit fly)
Length = 206
Score = 80.2 bits (189), Expect = 2e-14
Identities = 39/105 (37%), Positives = 60/105 (57%)
Query: 14 LSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMS 73
L P +S PPY H Q+GDP LR+ +E VP E+I ++EI +I + V+ Y VG++
Sbjct: 5 LLPTRIMSAPPYRHFTQIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVA 64
Query: 74 APQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYNED 118
APQ+G+ +RI VM+ + I + R M ++P V N +
Sbjct: 65 APQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSILPLAVFINPE 109
Score = 67.7 bits (158), Expect = 1e-10
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKLAIPF 174
G P+ W AR+AQHE++HL+G +Y+D MD T +C+ WE++N ++G+ AI F
Sbjct: 149 GTPSEMELEGWNARIAQHEVDHLNGTIYMDRMDLSTFNCILWEQINAAEGRSAIWF 204
>UniRef50_Q4V8U4 Cluster: Zgc:114141; n=1; Danio rerio|Rep:
Zgc:114141 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 247
Score = 77.8 bits (183), Expect = 1e-13
Identities = 41/98 (41%), Positives = 56/98 (57%)
Query: 19 GVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIG 78
G +PPYNHV QVGDP LR + V I+ E+Q +I L VM K + VG+SAPQIG
Sbjct: 62 GSPVPPYNHVCQVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIG 121
Query: 79 VNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
V +RI ++ L A V++RG+ +P + N
Sbjct: 122 VPLRILALEYPKKMLEESSTASVEARGLVAVPLMIFIN 159
Score = 52.4 bits (120), Expect = 6e-06
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
NE S W AR+ QHE++HL+G LY+D MD KT V WEE N
Sbjct: 198 NEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMDSKTFINVKWEEHN 246
>UniRef50_Q9HBH1 Cluster: Peptide deformylase, mitochondrial
precursor; n=9; Euteleostomi|Rep: Peptide deformylase,
mitochondrial precursor - Homo sapiens (Human)
Length = 243
Score = 66.9 bits (156), Expect = 2e-10
Identities = 36/94 (38%), Positives = 50/94 (53%)
Query: 23 PPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMR 82
PP++HV QVGDP LR V+ PV + E+Q L +L VM + + VG+SAPQ+GV +
Sbjct: 62 PPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 121
Query: 83 IFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
+ ++L P R ME P V N
Sbjct: 122 VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155
Score = 49.2 bits (112), Expect = 5e-05
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 129 WAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
WAAR+ QHE++HL G L++D MD +T + V W +VN
Sbjct: 207 WAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>UniRef50_A7P7U0 Cluster: Chromosome chr9 scaffold_7, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr9 scaffold_7, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 253
Score = 63.7 bits (148), Expect = 2e-09
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 19 GVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIG 78
G P +V+ GDP L + ++ V I + IQ +I + M VG++APQIG
Sbjct: 82 GDKKPALPEIVKAGDPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIG 141
Query: 79 VNMRIFVMQ---LNP-LQLANVPQAIVKSRGMEVIPF-----------TVRYNEDGNPTS 123
+ +R F+ + LNP L+ A + V F + +G P
Sbjct: 142 IPLRCFIAKQVILNPKLRKKGNRTAFFFEGCLSVDGFRAVVERHLQVEVTGLSRNGKPIK 201
Query: 124 NTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCV 158
W AR+ QHE +HLDG LYVD M +T V
Sbjct: 202 VDASGWKARILQHECDHLDGTLYVDKMVPRTFRTV 236
>UniRef50_UPI000051A696 Cluster: PREDICTED: similar to CG31373-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31373-PA - Apis mellifera
Length = 224
Score = 63.3 bits (147), Expect = 3e-09
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 5 RKILNWYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVM 64
+K+ Y +P+ + PPYN + QVG+P LR+ + + + I+T+E Q ++ L ++
Sbjct: 29 KKLCQIYLTETPES--AKPPYNFICQVGNPVLRQKASFIDEKIIQTQEFQKILDHLYELL 86
Query: 65 NKYKSVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGN 120
K +VG++APQIG+ ++FV+++ + ++ I K G+ P T N N
Sbjct: 87 KKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYFINPKMN 142
Score = 35.1 bits (77), Expect = 0.92
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
N+ G S W AR+ HE++HL G LY D M
Sbjct: 177 NKFGESFSMKAEGWLARIIHHEMDHLKGHLYTDRM 211
>UniRef50_Q6DIL5 Cluster: Peptide deformylase like protein; n=2;
Xenopus tropicalis|Rep: Peptide deformylase like protein
- Xenopus tropicalis (Western clawed frog) (Silurana
tropicalis)
Length = 239
Score = 60.9 bits (141), Expect = 2e-08
Identities = 33/100 (33%), Positives = 48/100 (48%)
Query: 19 GVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIG 78
G PPY+ V Q GDP LR + VP I + Q ++ ++ V+ VG+SAPQIG
Sbjct: 54 GPVTPPYSRVTQTGDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIG 113
Query: 79 VNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYNED 118
V +RI + VP + +R M P + N +
Sbjct: 114 VPLRILAVAFPQQMYQAVPPEVRNAREMSPFPLQIFINPE 153
Score = 54.4 bits (125), Expect = 1e-06
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
N G + + WAAR+ QHE++HLDG LY+D MD +T + W EVN
Sbjct: 190 NPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDPRTFVNISWMEVN 238
>UniRef50_Q1IJN4 Cluster: Peptide deformylase; n=1; Acidobacteria
bacterium Ellin345|Rep: Peptide deformylase -
Acidobacteria bacterium (strain Ellin345)
Length = 208
Score = 59.7 bits (138), Expect = 4e-08
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+VQ G+P LR +EP+ I+ I ++EI LI +R + VG++APQ+GV +++ +++
Sbjct: 17 LVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQLAIIE 76
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDW 129
++P + RG +PF V N P + D+
Sbjct: 77 DRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDF 118
Score = 39.9 bits (89), Expect = 0.032
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 129 WAARVAQHEIEHLDGKLYVDIMDRKTMS 156
W AR+ QHEI+HL+G LYVD M +T +
Sbjct: 157 WYARILQHEIDHLNGTLYVDRMRSQTFA 184
>UniRef50_Q7NJV3 Cluster: Peptide deformylase 1; n=5; Bacteria|Rep:
Peptide deformylase 1 - Gloeobacter violaceus
Length = 227
Score = 59.3 bits (137), Expect = 5e-08
Identities = 29/89 (32%), Positives = 53/89 (59%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V+ GDP LR ++P+ + I+++ IQ LI + M + VG++APQ+GV++++ V++
Sbjct: 48 IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 107
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
P + + A + R E +PF V N
Sbjct: 108 DRPEYIERLSGAERREREREPVPFHVLIN 136
Score = 39.9 bits (89), Expect = 0.032
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 129 WAARVAQHEIEHLDGKLYVDIMDRKTMS 156
W AR+ QHEI+HL+G L VD MD +T S
Sbjct: 188 WYARILQHEIDHLNGLLCVDRMDLQTFS 215
>UniRef50_P96113 Cluster: Peptide deformylase; n=6;
Thermotogales|Rep: Peptide deformylase - Thermotoga
maritima
Length = 164
Score = 58.0 bits (134), Expect = 1e-07
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 27/139 (19%)
Query: 32 GDPTLRKVSEPVPI--ENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ-- 87
GDP LRK ++PV EN+K K I+ +I M Y VG++APQ+G++ R FVM
Sbjct: 8 GDPVLRKRAKPVTKFDENLK-KTIERMIE----TMYHYDGVGLAAPQVGISQRFFVMDVG 62
Query: 88 ------LNPLQLANVPQAIVKSRGMEVIP-----------FTVRY-NEDGNPTSNTYRDW 129
+NP L P+ V G P V+Y N G +
Sbjct: 63 NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGY 122
Query: 130 AARVAQHEIEHLDGKLYVD 148
AARV QHE +HL+G L +D
Sbjct: 123 AARVFQHEFDHLNGVLIID 141
>UniRef50_A0LUE1 Cluster: Peptide deformylase; n=5;
Actinomycetales|Rep: Peptide deformylase - Acidothermus
cellulolyticus (strain ATCC 43068 / 11B)
Length = 180
Score = 58.0 bits (134), Expect = 1e-07
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 22/139 (15%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPL 91
GDP LR +EPV + KE++ LI L M VG++APQIGV++R+FV ++ +
Sbjct: 10 GDPVLRTPAEPVTDFD---KELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFVYDVDGV 66
Query: 92 --QLANVPQAIVKSR-----GMEVIP---FTVR---------YNEDGNPTSNTYRDWAAR 132
L N + + + G +P + ++ +NE G P D AR
Sbjct: 67 VGHLVNPSLDLSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGEPVILEGSDLLAR 126
Query: 133 VAQHEIEHLDGKLYVDIMD 151
QHE +HLDG L++D +D
Sbjct: 127 CVQHETDHLDGVLFIDRLD 145
>UniRef50_Q93LE9 Cluster: Peptide deformylase; n=4;
Leptospira|Rep: Peptide deformylase - Leptospira
interrogans
Length = 178
Score = 56.4 bits (130), Expect = 3e-07
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
++++GDP LRK+SEPV + I+TKE + LI + M + VG++APQIG+ +I V+
Sbjct: 6 ILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Score = 33.9 bits (74), Expect = 2.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
+E GN T + A V QHE +HL G LYVD
Sbjct: 124 DEKGNQFDETIDGYKAIVYQHECDHLQGILYVD 156
>UniRef50_Q73M64 Cluster: Polypeptide deformylase; n=1; Treponema
denticola|Rep: Polypeptide deformylase - Treponema
denticola
Length = 169
Score = 56.0 bits (129), Expect = 5e-07
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 23/141 (16%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
V+ +G+ TLR+VS+PV E I + I++LI ++ + K +G++APQ+G N+R+F++
Sbjct: 3 VLYLGEETLREVSKPV--EKID-ENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVF 59
Query: 88 LNPLQLANV-PQAIVKSRGM---------------EVI-PFTVR---YNEDGNPTSNTYR 127
+N + + P+ I S+ M EV+ P V+ N DG +
Sbjct: 60 INEQKYVFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEAS 119
Query: 128 DWAARVAQHEIEHLDGKLYVD 148
ARV QHE +HL+G L++D
Sbjct: 120 GLLARVIQHENDHLNGILFID 140
>UniRef50_UPI0001554B2E Cluster: PREDICTED: similar to bromodomain
adjacent to zinc finger domain, 1A; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to bromodomain adjacent
to zinc finger domain, 1A - Ornithorhynchus anatinus
Length = 200
Score = 54.8 bits (126), Expect = 1e-06
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
+E+G P W AR+ QHE++HL G LY+D MD +T + V W EVN
Sbjct: 151 DENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKMDSRTFTNVRWMEVN 199
>UniRef50_A2SPW1 Cluster: Peptide deformylase; n=1;
Methanocorpusculum labreanum Z|Rep: Peptide deformylase
- Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 162
Score = 54.0 bits (124), Expect = 2e-06
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 23/137 (16%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ---- 87
G L +V+EPV + T E+ ++ ++ ++ +++ VG++APQ+G+ R FVM
Sbjct: 7 GKTVLAQVAEPV---DTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPGDK 63
Query: 88 ----LNPLQLANVPQAIVKSRGMEVIP-----------FTVRY-NEDGNPTSNTYRDWAA 131
+NP + G +P TVRY NE G +D+ A
Sbjct: 64 VRRVINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRYTNEAGELIEEELKDYPA 123
Query: 132 RVAQHEIEHLDGKLYVD 148
RV HE +HLDG L+VD
Sbjct: 124 RVFLHEYDHLDGILFVD 140
>UniRef50_Q8GDQ9 Cluster: Polypeptide deformylase; n=1;
Heliobacillus mobilis|Rep: Polypeptide deformylase -
Heliobacillus mobilis
Length = 166
Score = 53.2 bits (122), Expect = 3e-06
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 22/144 (15%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V++GDP LR+ ++ V N + L+ + M K VG++APQIG++ R+ V+
Sbjct: 20 IVKIGDPVLREKAKTVTKFNAN---LGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVVID 76
Query: 88 LNPLQLANVPQAIVKSRGMEV-------IP-FTVRYNED-------GNPTSNTY----RD 128
+ ++ V I+++ G ++ IP F N N Y
Sbjct: 77 VGDGRIELVNPEILEAEGSQIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGEEYVIEGTG 136
Query: 129 WAARVAQHEIEHLDGKLYVDIMDR 152
+ AR QHEI+HL+G L+VD++D+
Sbjct: 137 FLARALQHEIDHLEGVLFVDLLDK 160
>UniRef50_A1SJG1 Cluster: Peptide deformylase; n=7;
Actinomycetales|Rep: Peptide deformylase - Nocardioides
sp. (strain BAA-499 / JS614)
Length = 181
Score = 53.2 bits (122), Expect = 3e-06
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 32 GDPTLRKVS-EPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ--- 87
GDP LRK + E V + KE++ L+ L M G++APQIGV +R+F
Sbjct: 10 GDPVLRKPAIEVVDFD----KELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFTWYVDG 65
Query: 88 -----LNPL-----QLANVPQAIVKSRGMEV-----IPFTVR-YNEDGNPTSNTYRDWAA 131
+NP +L + P+ + G+ V + R +N G+P + + A
Sbjct: 66 EPGHLVNPQLDLSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGDPVTIEGTELLA 125
Query: 132 RVAQHEIEHLDGKLYVDIMD 151
R QHE +HLDG L++D +D
Sbjct: 126 RALQHETDHLDGVLFIDRLD 145
>UniRef50_Q8XJX0 Cluster: Peptide deformylase 2; n=3; Clostridium
perfringens|Rep: Peptide deformylase 2 - Clostridium
perfringens
Length = 155
Score = 52.4 bits (120), Expect = 6e-06
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 28/144 (19%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+VQ+G L+KVSEPV N E++ LI L+ + + +G++APQI VN R+ +
Sbjct: 6 IVQIGHEALKKVSEPVKDVN----EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVYIN 61
Query: 88 ----------LNPLQLANVPQ----------AIVKSRGMEVIPFTVR---YNEDGNPTSN 124
+NP ++ V + + V G+ P VR NE G
Sbjct: 62 FGDGENEYVLINP-EVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGELKVY 120
Query: 125 TYRDWAARVAQHEIEHLDGKLYVD 148
+D AR HEI+HL+G +YVD
Sbjct: 121 EAQDLLARCFLHEIDHLEGIMYVD 144
>UniRef50_Q2JXI3 Cluster: Peptide deformylase; n=2;
Synechococcus|Rep: Peptide deformylase - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 175
Score = 51.6 bits (118), Expect = 1e-05
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 32/157 (20%)
Query: 30 QVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV---- 85
Q+GDP L +V+EPV T +Q LI ++ + + + VG++APQ+G +++ +
Sbjct: 7 QLGDPILTQVAEPVA--EFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVIIVASR 64
Query: 86 --------------MQLNPLQLANVPQAIVKSRGMEVIP-----------FTVRYN-EDG 119
+ +NP LA + ++ G +P V Y+ +G
Sbjct: 65 PNPRYPDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEYHTPEG 124
Query: 120 NPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMS 156
+ +RD+ AR+ QHE +HL G+L++D ++ +S
Sbjct: 125 SRQRVVWRDFPARIFQHEYDHLRGRLFLDRQPQQLLS 161
>UniRef50_Q28V79 Cluster: Peptide deformylase; n=16;
Proteobacteria|Rep: Peptide deformylase - Jannaschia sp.
(strain CCS1)
Length = 174
Score = 51.6 bits (118), Expect = 1e-05
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL---- 88
DP L+KV+ PVP T E++ L + M +G++APQ+GV R+ V+
Sbjct: 10 DPRLKKVAAPVPDV---TDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVLDCEKGD 66
Query: 89 ----NPLQLANVPQAIVKSRGMEV-------IP-----------FTVRYNE-DGNPTSNT 125
PL + N P+ I S M IP TVR+ + +G T
Sbjct: 67 DVTPRPLAMFN-PEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGAEQEET 125
Query: 126 YRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGK 169
+ A QHEI+HL+GKL++D + + + V L + +
Sbjct: 126 FDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169
>UniRef50_Q9RD27 Cluster: Peptide deformylase 1; n=2;
Actinomycetales|Rep: Peptide deformylase 1 -
Streptomyces coelicolor
Length = 218
Score = 51.2 bits (117), Expect = 1e-05
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V GDP LR+ +EP + + + + LR M+ VG++APQ+GV +R+ V++
Sbjct: 26 IVAAGDPVLRRAAEPYDGQ-VAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNP 121
+P A VP + +RG PF V N P
Sbjct: 85 -DP---APVPDEVRVARGRVPQPFRVLVNPSYEP 114
Score = 43.2 bits (97), Expect = 0.003
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMS 156
++E G + W AR+ QHE +HLDG LY+D + ++++
Sbjct: 147 HDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDRAELRSLA 188
>UniRef50_A7SK78 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 192
Score = 50.4 bits (115), Expect = 2e-05
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 22 LPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNM 81
+P + QVGDP LR+ +E V + + + + + ++ +L VM + G++APQIGV +
Sbjct: 5 IPRDPKIRQVGDPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGL 64
Query: 82 RIFVMQ-----LNPLQLANVPQAIVKSRGMEVIPFTVRYNED---GNPTSNTYRDWAARV 133
++ M+ + L+ +K G+ ++P V N NP +R+ V
Sbjct: 65 QVIAMEYTGKHMKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSV 124
Query: 134 AQH 136
H
Sbjct: 125 EGH 127
Score = 44.8 bits (101), Expect = 0.001
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 118 DGNPTSNTYR--DWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEE 162
D N T T+R W AR+ QHE++HL G LYVD M KT W++
Sbjct: 143 DQNATPITWRAAGWPARILQHEVDHLKGNLYVDSMLYKTFMNNNWQK 189
>UniRef50_O83738 Cluster: Peptide deformylase; n=1; Treponema
pallidum|Rep: Peptide deformylase - Treponema pallidum
Length = 162
Score = 49.6 bits (113), Expect = 4e-05
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query: 31 VGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ--- 87
+G+P L VSEPV + ++++ I + VM VG++APQ+G +R+FV+
Sbjct: 6 LGEPCLTTVSEPVSEVD---EQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVEH 62
Query: 88 -----LNPLQLANVPQAIVKSRGMEVIP-----------FTVRY-NEDGNPTSNTYRDWA 130
+NP A + G IP +V+Y +E+G +
Sbjct: 63 HVRAFINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADGIL 122
Query: 131 ARVAQHEIEHLDGKLYVDIMDRK 153
ARV QHE +HLDG L++D +D K
Sbjct: 123 ARVIQHEYDHLDGILFLDRIDEK 145
>UniRef50_A4RSE7 Cluster: Peptide deformylase, mitochondrial; n=2;
Ostreococcus|Rep: Peptide deformylase, mitochondrial -
Ostreococcus lucimarinus CCE9901
Length = 274
Score = 48.4 bits (110), Expect = 9e-05
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
VVQ G P LR V+ V ++ I + EIQ LI ++ V + + VG++APQ+G R+ V++
Sbjct: 55 VVQAGAPALRDVARAVDVDEIDSTEIQELIAEMLRVC-RARGVGLAAPQLGARRRVVVLE 113
Score = 48.0 bits (109), Expect = 1e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTM 155
Y DG P W AR+ QHE++HLDG LY D M+ +T+
Sbjct: 180 YGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRMESRTL 220
>UniRef50_Q2HVV8 Cluster: Formylmethionine deformylase; n=2;
Medicago truncatula|Rep: Formylmethionine deformylase -
Medicago truncatula (Barrel medic)
Length = 266
Score = 48.0 bits (109), Expect = 1e-04
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLS 166
++ G P W AR+ QHE +HLDG LYVD M +T WE +N+S
Sbjct: 193 FDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFR--SWENINMS 242
Score = 46.8 bits (106), Expect = 3e-04
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 27 HVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
H+VQ GDP L + + V I + +IQ +I + VM + +SA +IG+ +RI V+
Sbjct: 66 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 125
Query: 87 QLNPLQLANVPQAIVK 102
+ L N + + K
Sbjct: 126 EEPKENLYNYTEEVNK 141
>UniRef50_Q3Y199 Cluster: Peptide deformylase; n=1; Enterococcus
faecium DO|Rep: Peptide deformylase - Enterococcus
faecium DO
Length = 163
Score = 47.6 bits (108), Expect = 2e-04
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 23/135 (17%)
Query: 36 LRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNP---LQ 92
L++ ++P+ ++ T E L+ L M +G++APQ+G N RI V++++ +
Sbjct: 13 LKRTAQPI---DVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVIEVDEGEKFE 69
Query: 93 LANVPQAIVKSRGMEV-----IPF-----------TVRY-NEDGNPTSNTYRDWAARVAQ 135
L N K ++V IP TVRY + DG T + AR Q
Sbjct: 70 LINPEIIEAKGESLDVEGCLSIPHVYGTVKRADEVTVRYYDRDGEEIEVTAFGYLARAFQ 129
Query: 136 HEIEHLDGKLYVDIM 150
HEI+HLDG L+++ M
Sbjct: 130 HEIDHLDGILFIEKM 144
>UniRef50_A3EQF2 Cluster: Peptide deformylase; n=1; Leptospirillum
sp. Group II UBA|Rep: Peptide deformylase -
Leptospirillum sp. Group II UBA
Length = 184
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/60 (31%), Positives = 39/60 (65%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+ ++G+P LRK++EP+ + I+T E QT + + M +G++APQ+ V+ ++ V++
Sbjct: 6 IAKMGNPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQVVVIE 65
Score = 33.1 bits (72), Expect = 3.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 91 LQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
L + N+ + +SR +++ + GN + + D+ A V QHE +HL G L++D M
Sbjct: 103 LSVDNLRGKVTRSRAVKMEAL----DRHGNTITLEWEDFPAVVLQHETDHLRGHLFLDRM 158
Query: 151 -DRKTMS 156
D T++
Sbjct: 159 KDMSTLT 165
>UniRef50_Q825U9 Cluster: Peptide deformylase 3; n=3;
Actinomycetales|Rep: Peptide deformylase 3 -
Streptomyces avermitilis
Length = 224
Score = 47.6 bits (108), Expect = 2e-04
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V GDP LR+ +EP + + + + LR M+ VG++APQ+GV +RI V++
Sbjct: 35 IVAAGDPVLRRGAEPYDGQ-LGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
+P A VP+ + RG PF V N
Sbjct: 94 -DP---APVPEEVGAVRGRVPQPFRVLVN 118
Score = 43.2 bits (97), Expect = 0.003
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMS 156
+E G + W AR+ QHE +HLDG LY+D + +++S
Sbjct: 157 DEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLS 197
>UniRef50_Q6LQG3 Cluster: Hypothetical polypeptide deformylase; n=2;
Photobacterium profundum|Rep: Hypothetical polypeptide
deformylase - Photobacterium profundum (Photobacterium
sp. (strain SS9))
Length = 175
Score = 46.8 bits (106), Expect = 3e-04
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 38/158 (24%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQT---LILKLRFVMNKYKSVGMSAPQIGVNMRIF 84
++Q+G+P LR VP E + +I+T L+ L +M ++ VG++APQ+G +R F
Sbjct: 7 IIQLGNPLLR-----VPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAF 61
Query: 85 VMQLN--------PLQLANV---PQAIVKSRGMEV-------IP-----------FTVRY 115
++ PL + P+ + +S ME IP VRY
Sbjct: 62 IVASRPNDRYPHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRY 121
Query: 116 -NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDR 152
N G+ + + AR+ QHE++HL+G +++D D+
Sbjct: 122 LNASGDVIETEFTGFIARIFQHELDHLNGIVFLDRADK 159
>UniRef50_Q8KCG7 Cluster: Peptide deformylase; n=10;
Chlorobiaceae|Rep: Peptide deformylase - Chlorobium
tepidum
Length = 187
Score = 46.8 bits (106), Expect = 3e-04
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 29/164 (17%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQ 92
DP L ++P ++ + + I+ LI ++ M K +G++APQ+G ++R+ V+ ++ ++
Sbjct: 10 DPVLAMKAKP--LKGVDSA-IEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVVDISTIK 66
Query: 93 -------LANVPQAIVKSRGMEV-------IP-----------FTVRYNEDG-NPTSNTY 126
+ + IV RG + +P T+ Y ++ + +
Sbjct: 67 EYADFKPMVVINPRIVAVRGRSLMEEGCLSVPGIAGNVVRPSAITLHYRDEKFEEHTADF 126
Query: 127 RDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKL 170
ARV QHEI+HLDG L+VD MD++ + E +++G++
Sbjct: 127 HSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGRV 170
>UniRef50_Q2LWW1 Cluster: Peptide deformylase; n=1; Syntrophus
aciditrophicus SB|Rep: Peptide deformylase - Syntrophus
aciditrophicus (strain SB)
Length = 189
Score = 46.0 bits (104), Expect = 5e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
++ GN S Y D+ ARVAQHE++HL+GKL VD
Sbjct: 133 FDRHGNRISKRYADFLARVAQHELDHLEGKLIVD 166
Score = 33.5 bits (73), Expect = 2.8
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 42 PVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
P+P+ +IQTL+ + + ++G++APQIG+N RI + +
Sbjct: 32 PIPLSREARDQIQTLVDAF---LERDDALGLAAPQIGINRRIVIFR 74
>UniRef50_Q7MT07 Cluster: Peptide deformylase; n=26; cellular
organisms|Rep: Peptide deformylase - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 189
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 113 VRY-NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKL 170
+RY +ED P + +AARV QHE +H+DGKL++D + + + N+ KGK+
Sbjct: 116 IRYVDEDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKV 174
Score = 43.2 bits (97), Expect = 0.003
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPL 91
G P LRKV+E + + K KE LI + M +G++APQIG+ +R+ V+ +PL
Sbjct: 9 GHPVLRKVAEDITPDYPKLKE---LIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPL 65
Query: 92 QLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHE 137
+ + P+ G + + E G Y + A HE
Sbjct: 66 K-EDYPEC----AGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHE 106
>UniRef50_P73441 Cluster: Peptide deformylase; n=6;
Cyanobacteria|Rep: Peptide deformylase - Synechocystis
sp. (strain PCC 6803)
Length = 187
Score = 45.6 bits (103), Expect = 6e-04
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 14 LSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMS 73
L K V PP + +GD LR+ ++ + + +++ +L+ + N +G++
Sbjct: 6 LVEKQKVDRPPLE-LHYLGDKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSAN---GIGLA 61
Query: 74 APQIGVNMRIFVMQ-------------LNPLQLANVPQAIVKSRGMEVIP---------- 110
APQ+G+N ++ V+ +NP + V G +P
Sbjct: 62 APQVGINKQLLVVDCEQDKPDEPPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPR 121
Query: 111 -FTVRY-NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMD 151
V Y +E G P + + ARV QHE++HL+G ++VD +D
Sbjct: 122 AIEVTYKDEHGRPQKRLFAELTARVIQHEMDHLNGVMFVDRVD 164
>UniRef50_A0Q116 Cluster: Peptide deformylase; n=8; Clostridium|Rep:
Peptide deformylase - Clostridium novyi (strain NT)
Length = 150
Score = 45.2 bits (102), Expect = 9e-04
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQ 92
D LRK V E I + I TLI ++ M + VG++APQ+G+ R+ V+ +
Sbjct: 11 DSILRKKCREV--EEINDR-ILTLIEDMKETMYEADGVGLAAPQVGILKRLVVIDVGEGP 67
Query: 93 LANVPQAIVKSRGME----------------VIPFTV---RYNEDGNPTSNTYRDWAARV 133
+ + I++S G + P+ V NE G P AR
Sbjct: 68 ITLINPEIIESEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGEPVEIKGEGLLARA 127
Query: 134 AQHEIEHLDGKLYVD 148
HE++HLDG L++D
Sbjct: 128 ICHELDHLDGTLFID 142
>UniRef50_Q2J552 Cluster: Peptide deformylase; n=2; Frankia|Rep:
Peptide deformylase - Frankia sp. (strain CcI3)
Length = 549
Score = 44.8 bits (101), Expect = 0.001
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 31/152 (20%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKY-------KSVGMSAPQIGVN 80
+VQ G+ LR+ + P + N + ++ + ++ +L + + K +G++APQ+G+N
Sbjct: 377 IVQEGEAILRQPARPFALPN-EAEDARRVVAELSSALERVSALHTFGKGLGIAAPQVGIN 435
Query: 81 MRIFVMQL---NPLQLANVPQAIVKSRGME--------------VIP----FTVRYNE-D 118
+++ + L L N P I SR + ++P V + + D
Sbjct: 436 RAAAIVRTAGGDTLTLLN-PSVIETSRETDEQYEGCLSFFDVRGLVPRPLELHVEHTDID 494
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
GN YR AR+ HEI+HL G+LY D M
Sbjct: 495 GNRHITVYRQGLARLVAHEIDHLHGQLYTDRM 526
>UniRef50_Q2Z018 Cluster: Polypeptide deformylase; n=1; uncultured
Chloroflexi bacterium|Rep: Polypeptide deformylase -
uncultured Chloroflexi bacterium
Length = 176
Score = 44.8 bits (101), Expect = 0.001
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMD 151
N G P + +DW AR+ QHEI+HL+G L+ D+ D
Sbjct: 125 NRRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTD 160
>UniRef50_A6DUA1 Cluster: Peptide deformylase; n=1; Lentisphaera
araneosa HTCC2155|Rep: Peptide deformylase -
Lentisphaera araneosa HTCC2155
Length = 197
Score = 44.8 bits (101), Expect = 0.001
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
V + G+P LRKV+EP+ N EI+ L+ ++ M + +G++APQ+G ++R+FV+
Sbjct: 10 VKKFGNPVLRKVAEPISEIN---DEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVI 65
>UniRef50_Q74GW5 Cluster: Polypeptide deformylase; n=8;
Proteobacteria|Rep: Polypeptide deformylase - Geobacter
sulfurreducens
Length = 182
Score = 44.4 bits (100), Expect = 0.001
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 27/140 (19%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLN--- 89
DP L+K + PV I N T+E L+ + M + VG++APQIGV+ R+ V+ ++
Sbjct: 25 DPVLKKKAVPVTIINDATRE---LVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDVSQRD 81
Query: 90 --PLQLANVPQAIVKSRG--------MEVIPFTVR-----------YNEDGNPTSNTYRD 128
P + + I+ G + V ++ N +G +
Sbjct: 82 ERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVVHRAEG 141
Query: 129 WAARVAQHEIEHLDGKLYVD 148
A QHEI+HLDG L+VD
Sbjct: 142 LLAIAFQHEIDHLDGVLFVD 161
>UniRef50_Q5FUM9 Cluster: Polypeptide deformylase; n=4;
Alphaproteobacteria|Rep: Polypeptide deformylase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 170
Score = 44.4 bits (100), Expect = 0.001
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 24 PYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRI 83
P + ++G+P L +V++ V + K EIQ+LI + M + G++APQ+ +RI
Sbjct: 2 PLLKIARMGNPVLHQVAQAV--SDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRI 59
Query: 84 FVMQLNPLQLANVPQAIV 101
FV + ++AN +A++
Sbjct: 60 FVYHVPTNRVANPEEALL 77
>UniRef50_A7BDR6 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 212
Score = 44.0 bits (99), Expect = 0.002
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
Y+ DGN + R W AR+ QHE +HL G LYVD
Sbjct: 147 YDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180
Score = 39.1 bits (87), Expect = 0.056
Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
G+P L +V++PV ++I + E++ L+ + M+ VG++APQ+GV ++FV
Sbjct: 10 GEPVLHRVADPV--DSIDS-ELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFV 60
>UniRef50_A1AZR4 Cluster: Peptide deformylase; n=1; Paracoccus
denitrificans PD1222|Rep: Peptide deformylase -
Paracoccus denitrificans (strain Pd 1222)
Length = 185
Score = 44.0 bits (99), Expect = 0.002
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 27/141 (19%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM------ 86
DP LR + EPV + EI L L M G++APQIG RIFVM
Sbjct: 36 DPALRVICEPVG--RLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVMDHGWKE 93
Query: 87 -----------QLNPL--QLANVPQAIVKSRGMEVI---PFTVR---YNEDGNPTSNTYR 127
Q+ PL ++ + +A + G V P T+ ++ G T
Sbjct: 94 GTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTGTLQLLTLT 153
Query: 128 DWAARVAQHEIEHLDGKLYVD 148
AR+AQHE +HLDG+L +D
Sbjct: 154 GIEARIAQHETDHLDGRLILD 174
>UniRef50_Q9Z6J2 Cluster: Peptide deformylase; n=9;
Chlamydiaceae|Rep: Peptide deformylase - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 186
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
G P LRK S P I I T EI+ L+ + M ++ VG++APQ+G N+ +FVM
Sbjct: 9 GSPILRKKSSP--IAEI-TDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60
Score = 33.1 bits (72), Expect = 3.7
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 129 WAARVAQHEIEHLDGKLYVDIMD 151
+ AR+ HE +HL+G LY+D+M+
Sbjct: 134 FTARIIMHETDHLNGVLYIDLME 156
>UniRef50_Q9FV53 Cluster: Peptide deformylase, mitochondrial
precursor; n=7; Magnoliophyta|Rep: Peptide deformylase,
mitochondrial precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 259
Score = 44.0 bits (99), Expect = 0.002
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 17 KHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQ 76
K V LP +V GDP L + + V I ++ IQ +I + VM VG++APQ
Sbjct: 65 KKKVDLP---EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQ 121
Query: 77 IGVNMRIFVMQ 87
IGV +RI V++
Sbjct: 122 IGVPLRIIVLE 132
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 104 RGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEV 163
R +EV+ Y+ G W AR+ QHE +HLDG LYVD M +T V ++
Sbjct: 190 RYLEVV--VTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDL 247
Query: 164 NLSKG 168
L++G
Sbjct: 248 PLAEG 252
>UniRef50_Q8REF0 Cluster: Peptide deformylase; n=3; Fusobacterium
nucleatum|Rep: Peptide deformylase - Fusobacterium
nucleatum subsp. nucleatum
Length = 174
Score = 43.6 bits (98), Expect = 0.003
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+ + G+ L+++++ V + I E + + + M + VG++APQIGV+ RIFV
Sbjct: 5 IKKYGEDVLKQIAKEVELSEIND-EFRQFLDDMVETMYETDGVGLAAPQIGVSKRIFVCD 63
Query: 88 ---------LNPLQLANVPQAIVKSRGMEVIP-----------FTVRY-NEDGNPTSNTY 126
+NP+ + + G +P ++Y NE G
Sbjct: 64 DGNGVLRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYGKEVEEIA 123
Query: 127 RDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSK 167
++ A V QHE +HLDG L+++ + + + N+ K
Sbjct: 124 ENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKK 164
>UniRef50_O51092 Cluster: Peptide deformylase; n=4; Borrelia|Rep:
Peptide deformylase - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 172
Score = 43.6 bits (98), Expect = 0.003
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 25/132 (18%)
Query: 45 IENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLN----PLQLANVPQAI 100
IENI K I+ K+ +M+ VG++APQ+G+++ +FV++ N PL N P I
Sbjct: 25 IENIDDK-IRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVRENKMARPLVFIN-PSII 82
Query: 101 VKS-------RGMEVIPFTVR------------YNEDGNPTSNTYRDWAARVAQHEIEHL 141
S G IP ++E+G + D+ AR+ QHE++HL
Sbjct: 83 ETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHL 142
Query: 142 DGKLYVDIMDRK 153
+G L++D + K
Sbjct: 143 NGVLFIDYYEEK 154
>UniRef50_Q5LNI5 Cluster: Peptide deformylase; n=2;
Alphaproteobacteria|Rep: Peptide deformylase -
Silicibacter pomeroyi
Length = 172
Score = 43.2 bits (97), Expect = 0.003
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 29/144 (20%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM------ 86
DP L+KV PV +I + E++ L + M +G++APQIGV R+ V+
Sbjct: 10 DPRLKKVCAPVA--DI-SDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVLDCVKEE 66
Query: 87 --------QLNPLQLANVPQAIVKSRGMEVIP-----------FTVRY-NEDGNPTSNTY 126
NP +A + + G IP V + + DG S T+
Sbjct: 67 SAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETF 126
Query: 127 RDWAARVAQHEIEHLDGKLYVDIM 150
A QHEI+HLDGKL++D +
Sbjct: 127 DGLWATCVQHEIDHLDGKLFIDYL 150
>UniRef50_A0YLK8 Cluster: Polypeptide deformylase; n=2;
Bacteria|Rep: Polypeptide deformylase - Lyngbya sp. PCC
8106
Length = 175
Score = 43.2 bits (97), Expect = 0.003
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
V Q+G+P LR+ ++P I +I +++QTLI L + K VG++APQ+ + R+ ++
Sbjct: 7 VAQLGNPVLRRHAQP--ITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRLLIVA 64
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYNED 118
P + PQA + + + P V ++ +
Sbjct: 65 SRPNR--RYPQAPLMAPTAMINPKIVNHSTE 93
>UniRef50_A2SPY2 Cluster: Formylmethionine deformylase; n=1;
Methanocorpusculum labreanum Z|Rep: Formylmethionine
deformylase - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 157
Score = 43.2 bits (97), Expect = 0.003
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPL 91
GDP L +E V +NI E++ ++ + M K +G+SAPQIGV+ R+F++ +
Sbjct: 9 GDPVLFLHAETV--QNIGPLELE-ILTNMWDTMIHNKCIGLSAPQIGVSKRLFIVNAGGV 65
Query: 92 QLANVPQAIVKS-------RGMEVIP-----------FTVRYNEDGNPTSNT-YRDWAAR 132
+ ++K G IP T RY + T T + AAR
Sbjct: 66 TIKGANPEVLKEGALVEEMEGSPCIPGIQRPVRRPGKITCRYLDISGETIETELKGIAAR 125
Query: 133 VAQHEIEHLDGKLYVD 148
HE +H +G LY+D
Sbjct: 126 AFLHEKDHHEGILYLD 141
>UniRef50_A6L9R8 Cluster: Peptide deformylase; n=2;
Parabacteroides|Rep: Peptide deformylase -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 185
Score = 43.2 bits (97), Expect = 0.003
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 33/147 (22%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ---- 87
G P LRK +E VP + +++ L+ + M VG++APQ+G+++R+ V+
Sbjct: 9 GQPVLRKEAEDVPKDY---PDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVIDGDVM 65
Query: 88 --------------LNPLQLANVPQAIVKSRGMEVIP-----------FTVRY-NEDGNP 121
+NP L + I G +P VRY +E+
Sbjct: 66 GDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWDENWEE 125
Query: 122 TSNTYRDWAARVAQHEIEHLDGKLYVD 148
+AAR+ QHE EHL G +++D
Sbjct: 126 HEEVVEGFAARIVQHECEHLTGHVFID 152
>UniRef50_Q8YVH1 Cluster: Peptide deformylase 2; n=9;
Bacteria|Rep: Peptide deformylase 2 - Anabaena sp.
(strain PCC 7120)
Length = 179
Score = 43.2 bits (97), Expect = 0.003
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
++Q+G+PTLR+ + +ENI IQ LI L + K VG+++PQ+ + R+F++
Sbjct: 8 IIQLGNPTLRQ--KAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVA 65
Query: 88 LNP 90
P
Sbjct: 66 SRP 68
Score = 40.7 bits (91), Expect = 0.018
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 91 LQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
L + + + + + +EV +T RY GN T D+ AR+ QHE +HLDG L++D
Sbjct: 103 LSVPGIRGLVPRHQAIEV-EYTDRY---GNLQKQTLTDFVARIFQHEFDHLDGVLFID 156
>UniRef50_Q9RRQ4 Cluster: Peptide deformylase; n=5; Deinococci|Rep:
Peptide deformylase - Deinococcus radiodurans
Length = 232
Score = 42.7 bits (96), Expect = 0.005
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 118 DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
DG P S D+ ARV QHE +HLDGKL++D
Sbjct: 160 DGQPRSIEAEDYLARVFQHETDHLDGKLFLD 190
>UniRef50_Q8DDE3 Cluster: Peptide deformylase 1; n=15;
Gammaproteobacteria|Rep: Peptide deformylase 1 - Vibrio
vulnificus
Length = 170
Score = 42.7 bits (96), Expect = 0.005
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
V+ D LR V++PV E + T EIQ ++ + M + +G++A Q+ ++ RI V+
Sbjct: 6 VLTFPDDRLRTVAKPV--EKV-TPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVVID 62
Query: 88 LN-----PLQLANVPQAIVK--SRGME-----------VIP----FTVR-YNEDGNPTSN 124
++ P+ L N P+ + K G+E ++P TV+ + DG+ +
Sbjct: 63 ISESRNEPMVLIN-PEILEKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDRDGHEFTL 121
Query: 125 TYRDWAARVAQHEIEHLDGKLYVDIM 150
D A QHE++HL GKL+VD +
Sbjct: 122 EADDLLAICIQHELDHLQGKLFVDYL 147
>UniRef50_A7FWQ4 Cluster: Peptide deformylase; n=4; Clostridium
botulinum|Rep: Peptide deformylase - Clostridium
botulinum (strain ATCC 19397 / Type A)
Length = 178
Score = 42.3 bits (95), Expect = 0.006
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
++QVGD TL++VS+ V + EI +I L+ + +G++APQIG RIF++
Sbjct: 28 ILQVGDKTLKRVSKKVECID---DEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFIID 84
Query: 88 L----NPLQLAN-----------VPQAIVKSRGMEVIPFTVR------YNEDGNPTSNTY 126
L P+ L N + + G E I R NE G +
Sbjct: 85 LRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGEEVTYEA 144
Query: 127 RDWAARVAQHEIEHLDGKLYVD 148
HE +HLDG +Y+D
Sbjct: 145 TGLLKNAFCHEYDHLDGIVYID 166
>UniRef50_Q54JC1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 243
Score = 42.3 bits (95), Expect = 0.006
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 27 HVVQVGDPTLRKVSEPVPIENIK-TKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
++V+VG+ LR+ + P E + + ++ L+ K+ M G++APQIGVN ++F+
Sbjct: 9 NIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLFL 68
Query: 86 MQLNPLQLANVP 97
++L + N P
Sbjct: 69 LELPSQEGLNCP 80
>UniRef50_Q8G534 Cluster: Peptide deformylase 1; n=3;
Bifidobacterium|Rep: Peptide deformylase 1 -
Bifidobacterium longum
Length = 217
Score = 41.9 bits (94), Expect = 0.008
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMS 156
+EDG S W AR+ QHE +HL G+LY+D + ++++
Sbjct: 151 DEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLT 191
>UniRef50_A0JX03 Cluster: Peptide deformylase; n=1; Arthrobacter
sp. FB24|Rep: Peptide deformylase - Arthrobacter sp.
(strain FB24)
Length = 226
Score = 41.1 bits (92), Expect = 0.014
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+VQ G P LR+ + P + + E+ LI +R VM+ VG++APQ+G+ +++ V++
Sbjct: 31 IVQAGHPVLRQQAAPYEGQ-LDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLE 89
Score = 38.7 bits (86), Expect = 0.074
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 98 QAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMS 156
QA+V + FT + G + W AR+ QHE +HL G LYVD + +++S
Sbjct: 138 QAVVSRHETVRLDFT---DPGGTRRQQDFFGWQARIVQHEADHLQGILYVDKAELRSLS 193
>UniRef50_Q7UHZ5 Cluster: Peptide deformylase; n=2;
Planctomycetaceae|Rep: Peptide deformylase -
Rhodopirellula baltica
Length = 201
Score = 41.1 bits (92), Expect = 0.014
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 27/145 (18%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
++ PTLR VS P+ + K K + +L L M ++ VG++A Q+ + +R+FV
Sbjct: 5 IIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDL---MYEFDGVGLAANQVDLPIRMFVAN 61
Query: 88 -------------LNPL----QLANVPQ----AIVKSRGMEVIPFTVR---YNEDGNPTS 123
LNP + + Q ++ G P TVR ++ GN +
Sbjct: 62 PTGKRDEGESWVILNPEIDRPKGNDTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEIN 121
Query: 124 NTYRDWAARVAQHEIEHLDGKLYVD 148
+ ARV QHE++HLDG ++ D
Sbjct: 122 QVLDGFMARVVQHEVDHLDGIMFFD 146
>UniRef50_Q9CBI2 Cluster: Peptide deformylase; n=28;
Actinomycetales|Rep: Peptide deformylase - Mycobacterium
leprae
Length = 197
Score = 41.1 bits (92), Expect = 0.014
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 34/154 (22%)
Query: 31 VGDPTLRKVSEPVPI--ENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ- 87
VGDP L + PV + + + LI + M+ VG++A QIG +R+FV
Sbjct: 9 VGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYGLRVFVYDC 68
Query: 88 --------------LNP-LQLANVPQAI----VKSRGMEVIP---FTVR---------YN 116
+NP L+ + +P+ + + G +P F + +
Sbjct: 69 AEDCRQTARRRGVVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGRAQWARVTGLD 128
Query: 117 EDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
DGNP + AR+ QHE HLDG LY+D +
Sbjct: 129 ADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYL 162
>UniRef50_Q97G95 Cluster: Peptide deformylase 2; n=9;
Clostridiales|Rep: Peptide deformylase 2 - Clostridium
acetobutylicum
Length = 150
Score = 41.1 bits (92), Expect = 0.014
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQ 92
D LRK S PV + + K ++I +L + N ++APQ+G+ ++ V+
Sbjct: 11 DEILRKKSRPVEVVDDKIRQILDDMLDT--LQNTENGAAIAAPQVGILKQLVVIATGEDI 68
Query: 93 LANVPQAIVKSRG-MEVIP-----------------FTVR-YNEDGNPTSNTYRDWAARV 133
+ V IVK G EV+ TV NE+G + T + A+
Sbjct: 69 IKLVNPKIVKKEGEQEVVEGCLSIPNVYGKLKRPKKVTVEALNENGEKITLTGEGFLAKC 128
Query: 134 AQHEIEHLDGKLYVDIM 150
HEI+HLDG L+ D++
Sbjct: 129 FCHEIDHLDGILFTDLV 145
>UniRef50_A0PZC9 Cluster: Peptide deformylase; n=1; Clostridium
novyi NT|Rep: Peptide deformylase - Clostridium novyi
(strain NT)
Length = 158
Score = 40.7 bits (91), Expect = 0.018
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 27 HVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
++V + LR+ S IE I E+ LI L+ + VG++APQIGV R F++
Sbjct: 5 NIVTADNQLLRRKSRR--IEKIDD-EVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFII 61
Query: 87 QL----NPLQLANVPQAIVK---------------SRGMEVIP---FTVRYNEDGNPTSN 124
L +PL L N P+ + K G+ + P NE G
Sbjct: 62 DLRDGNDPLILLN-PKILKKIGKYEDAEGCLSYPGYEGVVIRPRKVIVAGMNEKGEMVQY 120
Query: 125 TYRDWAARVAQHEIEHLDGKLYVDI 149
AR HE +HLDG LY+D+
Sbjct: 121 VATGLMARAICHETDHLDGVLYMDL 145
>UniRef50_Q2S316 Cluster: Peptide deformylase; n=1; Salinibacter
ruber DSM 13855|Rep: Peptide deformylase - Salinibacter
ruber (strain DSM 13855)
Length = 195
Score = 40.7 bits (91), Expect = 0.018
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPL 91
G LR ++PV EN T+ +Q LI + M+ +G++APQ+G R+FV+ L P+
Sbjct: 9 GHEALRNETDPVQ-EN--TEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVVDLTPM 65
Query: 92 --QLANVPQAIVKSRGMEVIPFTVRYNED 118
++A + + + + P V +ED
Sbjct: 66 ADEIAEAGEPLPPQPMVFINPEIVEESED 94
>UniRef50_A1G4Y1 Cluster: Transcriptional regulator, XRE family;
n=2; Salinispora|Rep: Transcriptional regulator, XRE
family - Salinispora arenicola CNS205
Length = 506
Score = 40.3 bits (90), Expect = 0.024
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 28 VVQVGDPTLRKVSEP--VPIENIKTKEIQTLILKLRFVMNKY----KSVGMSAPQIGVNM 81
++Q G LR+ + P +P E+ +++ + F +++ K VG++APQ+G+
Sbjct: 334 ILQHGADLLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGR 393
Query: 82 RIFVMQ-----------LNPLQLANVPQ---------AIVKSRGMEVIPFTVRYNE---D 118
V++ LNP + P + RG+ P + D
Sbjct: 394 AAAVVRPPDLSGEPVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTHID 453
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
G+ +Y AR+ HEI+HL+G+LYVD M
Sbjct: 454 GSRVITSYEYGMARLVAHEIDHLEGRLYVDRM 485
>UniRef50_Q8XZJ6 Cluster: Peptide deformylase 2; n=47;
Proteobacteria|Rep: Peptide deformylase 2 - Ralstonia
solanacearum (Pseudomonas solanacearum)
Length = 177
Score = 40.3 bits (90), Expect = 0.024
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
++++GD L +V++PV + +T E+ LI + M+ + G++APQIGV++++ +
Sbjct: 5 ILKMGDSRLLRVAKPV--QRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60
>UniRef50_Q82TW4 Cluster: Peptide deformylase 1; n=11;
Betaproteobacteria|Rep: Peptide deformylase 1 -
Nitrosomonas europaea
Length = 176
Score = 39.9 bits (89), Expect = 0.032
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
V+++GDP L + + V + T E++ L+ ++ M G++APQIGV++++ +
Sbjct: 5 VLKMGDPCLLQPARRV--DQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVIFG 62
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNP-TSNTYRDW 129
+ P A E +PFTV N P T DW
Sbjct: 63 VE--HSPRYPDA-------ESVPFTVLINPVLTPLTEQMEEDW 96
>UniRef50_O05100 Cluster: Peptide deformylase 1; n=5;
Clostridiales|Rep: Peptide deformylase 1 - Clostridium
acetobutylicum
Length = 150
Score = 39.9 bits (89), Expect = 0.032
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ---- 87
GD LRK S V E I K + TLI + M VG++APQ+G+ R+ V+
Sbjct: 10 GDELLRKKSRKV--EKID-KRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVVIDVGEG 66
Query: 88 ----LNPLQLANVPQAI-------VKSRGMEV-IPFTVR---YNEDGNPTSNTYRDWAAR 132
+NP L +A+ + R EV P V+ NE G D AR
Sbjct: 67 PVVLINPEILETSGKAVDVEGCLSIPERQGEVERPTYVKAKALNEKGEEIVIEAEDLFAR 126
Query: 133 VAQHEIEHLDGKLYVD 148
HE +HL+G L+VD
Sbjct: 127 AICHETDHLNGVLFVD 142
>UniRef50_Q5ZXW6 Cluster: Polypeptide deformylase; n=3; Legionella
pneumophila|Rep: Polypeptide deformylase - Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1
/ATCC 33152 / DSM 7513)
Length = 237
Score = 39.5 bits (88), Expect = 0.043
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCV 158
Y+E+GN + ARV QHEI+HL+G L I DR T CV
Sbjct: 164 YDEEGNVHQQIENGFYARVLQHEIDHLNGVL---ITDRLTPDCV 204
>UniRef50_Q7V8G6 Cluster: Peptide deformylase 1; n=26;
Bacteria|Rep: Peptide deformylase 1 - Prochlorococcus
marinus (strain MIT 9313)
Length = 192
Score = 39.5 bits (88), Expect = 0.043
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRI 83
++++G+P LRKVS V ++ + I +LI L+ + ++ G++APQIGV +R+
Sbjct: 6 ILRMGNPQLRKVSNVV--DDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRV 59
Score = 36.7 bits (81), Expect = 0.30
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
NEDG + + ARV QHE +HLDG L+ D
Sbjct: 123 NEDGFEVEHCLEGFPARVIQHECDHLDGVLFPD 155
>UniRef50_A3V198 Cluster: Peptide deformylase; n=12;
Rhodobacterales|Rep: Peptide deformylase - Loktanella
vestfoldensis SKA53
Length = 169
Score = 39.1 bits (87), Expect = 0.056
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 28/148 (18%)
Query: 29 VQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV--- 85
VQ P LR + PV T EI+ L ++ M+ VG++APQ+GV + + V
Sbjct: 7 VQWPHPVLRTPAAPVAAI---TDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAVVDA 63
Query: 86 --MQLNPLQLANVPQAIVKS-------RGMEVIP-----------FTVRY-NEDGNPTSN 124
M+ +++AN P+ + S G +P TVR+ N DG
Sbjct: 64 STMRGQAVRMAN-PEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGEVEER 122
Query: 125 TYRDWAARVAQHEIEHLDGKLYVDIMDR 152
+ A QH+I+HL G++++D M +
Sbjct: 123 DFVGLWATSVQHQIDHLAGRMFIDRMTK 150
>UniRef50_Q5FPX1 Cluster: Peptide deformylase; n=4; Bacteria|Rep:
Peptide deformylase - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 184
Score = 38.7 bits (86), Expect = 0.074
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 19 GVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIG 78
G+ P ++ P LR+V+ V E+I I+ + + M K +G++APQ+G
Sbjct: 9 GIDDVPPTPILIAPQPVLREVTRDVRPEDIAF--IREQLPGMFSAMYKAPGIGLAAPQVG 66
Query: 79 VNMRIFVMQ-------------LNPLQLANVPQAIVKSRGMEVIP-----------FTVR 114
+ MR ++ +NP +++ Q + G +P VR
Sbjct: 67 LGMRFALVDVAEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVR 126
Query: 115 Y-NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
Y N G A QHE++HLDG L+VD
Sbjct: 127 YRNLAGETIERDASGLLATCIQHEMDHLDGILFVD 161
>UniRef50_A4AGB1 Cluster: Polypeptide deformylase; n=3;
Actinobacteria (class)|Rep: Polypeptide deformylase -
marine actinobacterium PHSC20C1
Length = 205
Score = 38.7 bits (86), Expect = 0.074
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
++ GDP L + PV + + TL+ + M + VG++APQ+GV +R+FV
Sbjct: 24 IIITGDPVLHTPANPVTAFD---SSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78
Score = 35.9 bits (79), Expect = 0.52
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 118 DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
D P W AR+ QHE +HLDG LY D
Sbjct: 140 DQKPFEIEASGWLARIFQHEYDHLDGVLYAD 170
>UniRef50_Q83GH8 Cluster: Peptide deformylase; n=2; Tropheryma
whipplei|Rep: Peptide deformylase - Tropheryma whipplei
(strain Twist) (Whipple's bacillus)
Length = 228
Score = 38.7 bits (86), Expect = 0.074
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRK 153
++E+ P + W AR+ QHE +HL G LYVD + +K
Sbjct: 162 FDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQK 200
>UniRef50_Q9ZDV8 Cluster: Peptide deformylase; n=11;
Rickettsieae|Rep: Peptide deformylase - Rickettsia
prowazekii
Length = 175
Score = 38.7 bits (86), Expect = 0.074
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 128 DWAARVAQHEIEHLDGKLYVDIM 150
DW ARV QHE +HL+GKL VD +
Sbjct: 133 DWLARVIQHEYDHLEGKLMVDYL 155
>UniRef50_Q4FVQ4 Cluster: Peptide deformylase; n=113;
Proteobacteria|Rep: Peptide deformylase - Psychrobacter
arcticum
Length = 184
Score = 38.7 bits (86), Expect = 0.074
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
++ DP LR ++ PV T EI+TLI + M + +G++A Q+ ++++ VM
Sbjct: 6 ILSYPDPRLRMIATPV---KEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIVMD 62
Query: 88 L-----------NPLQLANVPQAIVKSRGMEVIPFT---------VR---YNEDGNPTSN 124
L NP V + G +P VR +++GN
Sbjct: 63 LSEDKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGNAIDE 122
Query: 125 TYRDWAARVAQHEIEHLDGKLYVDIMDR 152
A QHEI+HL+G ++VD + R
Sbjct: 123 EVEGLLAVCIQHEIDHLNGVIFVDYLSR 150
>UniRef50_O66847 Cluster: Peptide deformylase; n=1; Aquifex
aeolicus|Rep: Peptide deformylase - Aquifex aeolicus
Length = 169
Score = 38.7 bits (86), Expect = 0.074
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 39 VSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNP------LQ 92
+ +P ++ KE++ LI + M + + VG++A QIGV + + V+ +P L+
Sbjct: 13 LKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKEDAPPLK 72
Query: 93 LANVPQAIVKSRG---------------MEVIPFTV----RYNEDGNPTSNTYRDWAARV 133
L + I + G +EV F NE G P T + A V
Sbjct: 73 LVLINPEIKEGEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAIV 132
Query: 134 AQHEIEHLDGKLYVD 148
QHE++HL G +VD
Sbjct: 133 FQHELDHLKGITFVD 147
>UniRef50_P94462 Cluster: Peptide deformylase 1; n=28;
Firmicutes|Rep: Peptide deformylase 1 - Bacillus
subtilis
Length = 160
Score = 38.7 bits (86), Expect = 0.074
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 42 PVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNP----LQLANVP 97
P + K+++ L+ + M + VG++APQIG+ R V+++ + L N P
Sbjct: 17 PAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAVVEIGDDRGRIDLVN-P 75
Query: 98 QAIVKS---RGME-VIPFT-------------VR-YNEDGNPTSNTYRDWAARVAQHEIE 139
+ + KS G+E + F VR +N G P R + AR QHE++
Sbjct: 76 EILEKSGEQTGIEGCLSFPNVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMD 135
Query: 140 HLDGKLY 146
HLDG L+
Sbjct: 136 HLDGVLF 142
>UniRef50_Q67PR5 Cluster: Peptide deformylase; n=17; Bacteria|Rep:
Peptide deformylase - Symbiobacterium thermophilum
Length = 217
Score = 38.3 bits (85), Expect = 0.098
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V+ LRK ++PV N I+ L+ + M VG++APQ+GV+ R+ V+
Sbjct: 6 IVKEPAEVLRKKAKPVTKINAS---IRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIVVD 62
Query: 88 -----------LNPLQLANVPQAIVKSRGMEVIPFTV----RYNE--------DGNPTSN 124
+NP ++ + + G IP V RY + G
Sbjct: 63 PQDGSGQLYQLINP-EIVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWI 121
Query: 125 TYRDWAARVAQHEIEHLDGKLYVD 148
+ AR+ QHEI+HLDG LY D
Sbjct: 122 DAEGYLARIFQHEIDHLDGILYTD 145
>UniRef50_Q7VED2 Cluster: Peptide deformylase; n=30;
Cyanobacteria|Rep: Peptide deformylase - Prochlorococcus
marinus
Length = 203
Score = 38.3 bits (85), Expect = 0.098
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 25/123 (20%)
Query: 51 KEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVK-------- 102
K I+ L+ K+ M K +G++APQIG ++ V+ L+ A P ++
Sbjct: 53 KNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPIILINPEITEFSA 112
Query: 103 -----SRG--------MEVI-PFTVRYN---EDGNPTSNTYRDWAARVAQHEIEHLDGKL 145
G ++VI P +++ N E G P AR QHE++HL+G L
Sbjct: 113 TIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHLNGVL 172
Query: 146 YVD 148
+VD
Sbjct: 173 FVD 175
>UniRef50_Q6AQ98 Cluster: Peptide deformylase; n=1; Desulfotalea
psychrophila|Rep: Peptide deformylase - Desulfotalea
psychrophila
Length = 169
Score = 38.3 bits (85), Expect = 0.098
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 30/142 (21%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL---- 88
DP LRK E V I K ++ L + M +G++APQIG ++++ V+
Sbjct: 11 DPVLRK--ETVAITVFDEKLVK-LTEDMAETMYDAPGIGLAAPQIGESLKLVVVSTARRE 67
Query: 89 ----NPLQLANVPQAIVKSRGM----------EVIPFTVRYNE--------DGNPTSNTY 126
+ +AN P+ + K E++ RY + +G P S T
Sbjct: 68 DSKQEYMVMAN-PEIVEKEESQVDEEGCLSVPELLAMVKRYRKIKVNYQDINGEPCSMTV 126
Query: 127 RDWAARVAQHEIEHLDGKLYVD 148
D A V QHEI+HL+G L++D
Sbjct: 127 EDRFAVVLQHEIDHLNGILFLD 148
>UniRef50_Q9FUZ2 Cluster: Peptide deformylase, chloroplast
precursor; n=4; core eudicotyledons|Rep: Peptide
deformylase, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 273
Score = 38.3 bits (85), Expect = 0.098
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V+ DP LR ++ + I + + ++ L+ + VM K +G+SAPQ+G+N+++ V
Sbjct: 83 IVEYPDPILRAKNKRIDIFD---ENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 139
Query: 88 -------------LNPL------QLANVPQAIVKSRGM--EVI-PFTVRYNE---DGNPT 122
+NP +L + + G+ EV+ P +V+ + G
Sbjct: 140 PAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERF 199
Query: 123 SNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSK---GKLAIPFSPE 177
S + AR+ QHE +HL+G L+ D M + + + E L K K +P SPE
Sbjct: 200 SISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLP-SPE 256
>UniRef50_Q92JI7 Cluster: Peptide deformylase 2; n=5; spotted fever
group|Rep: Peptide deformylase 2 - Rickettsia conorii
Length = 202
Score = 38.3 bits (85), Expect = 0.098
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD-IMDRKTMS 156
Y+ +GN + ARV QHEI+HL+GK+++D + +K M+
Sbjct: 141 YDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKKIMT 183
>UniRef50_Q1Q7Q2 Cluster: Strongly similar to peptide deformylase;
n=1; Candidatus Kuenenia stuttgartiensis|Rep: Strongly
similar to peptide deformylase - Candidatus Kuenenia
stuttgartiensis
Length = 170
Score = 37.9 bits (84), Expect = 0.13
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 27 HVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
++V P LR+ ++P+ N ++ K+ +M + +G++APQ+G ++R+FV+
Sbjct: 2 NIVTYPAPVLRQKAKPLTEINA---DVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVI 58
Query: 87 QL---NPLQLANVPQAIVKSRGME-----------VIPFTVR--------YNEDGNPTSN 124
+ N + +I++ G ++ +R YN +G
Sbjct: 59 DVVGNNVDDNVFINPSIMEEAGETSNEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEV 118
Query: 125 TYRDWAARVAQHEIEHLDGKLYVDIM 150
D AR QHE++HL+G L++D M
Sbjct: 119 VLEDLLARAWQHELDHLNGCLFIDRM 144
>UniRef50_Q1MQA6 Cluster: Peptide deformylase; n=4;
Desulfovibrionaceae|Rep: Peptide deformylase - Lawsonia
intracellularis (strain PHE/MN1-00)
Length = 171
Score = 37.9 bits (84), Expect = 0.13
Identities = 33/146 (22%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
++Q D +L+K+S + +++I T++I L ++ M +G++APQ+G +R+ V+
Sbjct: 5 ILQYPDISLQKIS--LEVQDI-TQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIVVD 61
Query: 88 LNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYV 147
++ + + ++ + VI E+G + YR R A+ ++ +D
Sbjct: 62 VSGPEQKSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDSNP 121
Query: 148 DIMDRKTMSCVCWE-EVNLSKGKLAI 172
+ + + VC + E++ GKL I
Sbjct: 122 VSFEAEGLLSVCLQHEIDHLDGKLFI 147
Score = 35.5 bits (78), Expect = 0.69
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 118 DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
D NP S + QHEI+HLDGKL++D
Sbjct: 118 DSNPVSFEAEGLLSVCLQHEIDHLDGKLFID 148
>UniRef50_A6PRT7 Cluster: Peptide deformylase; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Peptide deformylase -
Victivallis vadensis ATCC BAA-548
Length = 197
Score = 37.9 bits (84), Expect = 0.13
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL 88
GDP L+ + PV T EI+ L ++ + + VG++APQ+G ++R+ V +
Sbjct: 15 GDPVLKAKARPV---EAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDI 68
>UniRef50_A5IFI4 Cluster: Polypeptide deformylase; n=4; Legionella
pneumophila|Rep: Polypeptide deformylase - Legionella
pneumophila (strain Corby)
Length = 172
Score = 37.9 bits (84), Expect = 0.13
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 26 NHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
N ++ +P LR+ ++P+ + ++ LI + +M +VG++APQIG++ R+ V
Sbjct: 2 NTLLDKNNPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIV 61
Score = 35.9 bits (79), Expect = 0.52
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
++ DGN + AR+ QHEI+HLDG L++D
Sbjct: 121 FDIDGNRITKKASGLEARILQHEIDHLDGFLFLD 154
>UniRef50_Q8I372 Cluster: Formylmethionine deformylase, putative;
n=5; Plasmodium|Rep: Formylmethionine deformylase,
putative - Plasmodium falciparum (isolate 3D7)
Length = 241
Score = 37.9 bits (84), Expect = 0.13
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV-- 85
+V+ DP LR+ SE V + K + + K+ +M + K +G+SAPQ+ ++ RI V
Sbjct: 67 IVKYPDPILRRRSEEVTNFDDNLKRV---VRKMFDIMYESKGIGLSAPQVNISKRIIVWN 123
Query: 86 ------MQLNPLQLAN---VPQAIVKSR---------GME------VIPFTVRYNEDGNP 121
+ N N V Q++VK + G+E I Y+ +G
Sbjct: 124 ALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYK 183
Query: 122 TSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
+ +R+ QHE +HL+G L++D M
Sbjct: 184 HLKILKGIHSRIFQHEFDHLNGTLFIDKM 212
>UniRef50_Q5DFX2 Cluster: SJCHGC05617 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05617 protein - Schistosoma
japonicum (Blood fluke)
Length = 123
Score = 37.9 bits (84), Expect = 0.13
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 5 RKILNWYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQT 55
R+I + YA+ +PKHG +PPYN + DP + E V I+ I K QT
Sbjct: 34 RQICDDYAKTNPKHGSIIPPYNGQL---DPYAKSYFESVNIQKILEKTGQT 81
>UniRef50_A0DLN6 Cluster: Chromosome undetermined scaffold_556,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_556,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 219
Score = 37.9 bits (84), Expect = 0.13
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 33/151 (21%)
Query: 26 NHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
+ ++++GD +K+++ + ++ ++ +I L+ + +V +S PQIG N +IFV
Sbjct: 18 HRILRIGDKDYQKITQQTQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFV 77
Query: 86 ----MQLNPLQLANV----------PQAIVKSRGMEV----------------IPFTVRY 115
M+ N N+ PQ + +SR +V P+ + Y
Sbjct: 78 VLKHMKKNQWCYNNLSSSDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEY 137
Query: 116 ---NEDGNPTSNTYRDWAARVAQHEIEHLDG 143
NE T + ARV QHE++HL+G
Sbjct: 138 QFINEKFKLIKQTLSGFEARVVQHEMDHLEG 168
>UniRef50_P63919 Cluster: Peptide deformylase-like; n=12;
Rhizobiales|Rep: Peptide deformylase-like - Brucella
melitensis
Length = 164
Score = 37.9 bits (84), Expect = 0.13
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+V+ DP LR +EPV + +++ +L M +G++AP IG++ R+ V++
Sbjct: 6 IVKYPDPRLRAAAEPVTTFDEGLRKLADDLLD---TMRAAPGIGITAPHIGISKRVVVLE 62
Query: 88 L----------NPLQLANVPQAIVKSRGMEVIPFTV-----------RYNE-DGNPTSNT 125
L NP + + I G +P V RY + DGN +
Sbjct: 63 LDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGNEQTEE 122
Query: 126 YRDWAARVAQHEIEHLDGKLYVDIMDR 152
A QHEI+ LDG +V + R
Sbjct: 123 SDGLLAVCHQHEIDQLDGIFWVQRLSR 149
>UniRef50_Q87I22 Cluster: Peptide deformylase 2; n=40;
Gammaproteobacteria|Rep: Peptide deformylase 2 - Vibrio
parahaemolyticus
Length = 168
Score = 37.5 bits (83), Expect = 0.17
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
+ DGNP + ++ A V QHEI+HL G L++D +
Sbjct: 113 DRDGNPITIESDEFLAIVMQHEIDHLSGNLFIDYL 147
>UniRef50_Q1GDF5 Cluster: Peptide deformylase; n=7;
Rhodobacteraceae|Rep: Peptide deformylase - Silicibacter
sp. (strain TM1040)
Length = 169
Score = 37.1 bits (82), Expect = 0.23
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+VQ DP L PV +++ TLI + M G++APQ+GV R+FVM
Sbjct: 6 IVQWPDPRLSTACAPVGA----AEDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFVMD 61
Query: 88 L-------NPLQLANVPQAIVKSRGMEV-------IP-----------FTVRYNE-DGNP 121
+ NP+ + P+ + +S + IP +R+ + D
Sbjct: 62 VDWKEGPRNPVVMI-YPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRAA 120
Query: 122 TSNTYRDWAARVAQHEIEHLDGKLYVD 148
T+ +AAR QHE +HLDG++ D
Sbjct: 121 QEQTFDGFAARCIQHEYDHLDGRVTFD 147
>UniRef50_Q2GE16 Cluster: Peptide deformylase; n=6;
Rickettsiales|Rep: Peptide deformylase - Neorickettsia
sennetsu (strain Miyayama)
Length = 186
Score = 37.1 bits (82), Expect = 0.23
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 113 VRY-NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDR 152
V+Y N DG W AR QHE++HL+G+LYV + +
Sbjct: 125 VKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSK 165
>UniRef50_Q2NCT3 Cluster: Peptide deformylase; n=4;
Sphingomonadales|Rep: Peptide deformylase -
Erythrobacter litoralis (strain HTCC2594)
Length = 194
Score = 37.1 bits (82), Expect = 0.23
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+++V DP L+ VSEPV + +++ L+ + M +G++A Q+GV R+ V+
Sbjct: 6 ILEVPDPRLKTVSEPVQPDEF-NDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRVLVID 64
Query: 88 LNPLQLANVPQ 98
L + P+
Sbjct: 65 LQEPDMDAEPE 75
>UniRef50_Q746R2 Cluster: Polypeptide deformylase; n=9;
Desulfuromonadales|Rep: Polypeptide deformylase -
Geobacter sulfurreducens
Length = 169
Score = 36.7 bits (81), Expect = 0.30
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 34/162 (20%)
Query: 24 PYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYK-SVGMSAPQIGVNMR 82
P ++Q P L+KV V + + I+ LI L M + SVG++APQIGV +R
Sbjct: 2 PAQTILQYPHPVLKKVCHTVTAID---EAIRGLIDDLIETMREGPGSVGVAAPQIGVTLR 58
Query: 83 IFV-----------------MQLNPLQLANVPQAIVKSRGMEVIPFT----------VRY 115
+ V + +NP + A+++ M V +T VR+
Sbjct: 59 VCVIDVSGSRHGKDNNHGLLLMVNPEIVDRSGNAVMREGCMSVPDYTGDVERSTEVRVRF 118
Query: 116 --NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD-IMDRKT 154
DG+ T + A QHE++HLDG L++D I+ KT
Sbjct: 119 LDGADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKT 160
>UniRef50_Q1NTV0 Cluster: Peptide deformylase; n=5;
Proteobacteria|Rep: Peptide deformylase - delta
proteobacterium MLMS-1
Length = 263
Score = 36.7 bits (81), Expect = 0.30
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 118 DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
DG P + ARV QHEI+HL+G L++D
Sbjct: 206 DGQPLEIEAEGFFARVLQHEIDHLEGTLFID 236
>UniRef50_A0Z0D3 Cluster: Peptide deformylase; n=1; Lyngbya sp. PCC
8106|Rep: Peptide deformylase - Lyngbya sp. PCC 8106
Length = 143
Score = 36.7 bits (81), Expect = 0.30
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 17 KHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQ 76
K + PP+ + +GD LR+ ++ + + T+ LI ++ M +G++APQ
Sbjct: 9 KQKLDNPPFQ-IHYLGDRVLRQSAKRISRVDDDTRR---LIREMLQTMYSADGIGLAAPQ 64
Query: 77 IGVNMRIFVMQLNPLQLANVPQAI----VKSRGMEVIPF 111
+GV ++ V+ P A P + +K E+ PF
Sbjct: 65 VGVQKQLIVIDCEPDNAATPPLILINPTIKKSSQEISPF 103
>UniRef50_A0Q456 Cluster: Peptide deformylase; n=11; Francisella
tularensis|Rep: Peptide deformylase - Francisella
tularensis subsp. novicida (strain U112)
Length = 174
Score = 36.7 bits (81), Expect = 0.30
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 25/145 (17%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM- 86
+++ P L++V++ V + I +++ I ++ +M + VG++A Q+G+ R F+M
Sbjct: 7 ILKYPHPVLKEVAKEVTKDEIND-DLRATIAEMHELMLEANGVGLAAIQVGIKKRFFIMY 65
Query: 87 ----QLNPLQLANVPQAIVKSRGMEV-----IPF-----------TVR---YNEDGNPTS 123
+ NP + + I++ G + + F TV+ NE G+
Sbjct: 66 DNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFGDEIE 125
Query: 124 NTYRDWAARVAQHEIEHLDGKLYVD 148
+ AR QHEI+HL+G + D
Sbjct: 126 IEKDGFLARCIQHEIDHLNGITFFD 150
>UniRef50_Q82TC8 Cluster: Peptide deformylase 2; n=134;
Bacteria|Rep: Peptide deformylase 2 - Nitrosomonas
europaea
Length = 185
Score = 36.7 bits (81), Expect = 0.30
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 27/147 (18%)
Query: 27 HVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
++++ D L K++ VP +I T+EI+TL+ + M +G++A Q+ V+ RI V+
Sbjct: 22 NILRYPDERLHKIATEVP--SI-TREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIVI 78
Query: 87 QLNP-----LQLANVPQAIVKSRGMEV------IP-----------FTVRYNE-DGNPTS 123
++ L L N P+ I S E +P TVR DG
Sbjct: 79 DVSETRDELLVLIN-PEIIASSGNAETQEGCLSVPGIFDKVTRAEEVTVRATGIDGKSFE 137
Query: 124 NTYRDWAARVAQHEIEHLDGKLYVDIM 150
A QHE++HL GK++V+ +
Sbjct: 138 MDASGLLAVCIQHEMDHLMGKVFVEYL 164
>UniRef50_Q74HB5 Cluster: Polypeptide deformylase; n=7;
Firmicutes|Rep: Polypeptide deformylase - Lactobacillus
johnsonii
Length = 137
Score = 36.3 bits (80), Expect = 0.40
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 58 LKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVI-------- 109
LK + NK ++ G++A IGV RI + + PL + + IV +
Sbjct: 31 LKDTLLSNKDRAAGLAANMIGVQKRIIALFVGPLPIVMLNPIIVAQDDKYLAYEGCLSLT 90
Query: 110 ---------PFTVRY-NEDGNPTSNTYRDWAARVAQHEIEHLDGKL 145
TV+Y NE+ ++ D+ A V QHE++H +G L
Sbjct: 91 GERPTERYKTITVKYQNENLETRQQSFSDFTAEVIQHEVDHCNGIL 136
>UniRef50_Q15Q99 Cluster: Peptide deformylase; n=1;
Pseudoalteromonas atlantica T6c|Rep: Peptide deformylase
- Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 188
Score = 36.3 bits (80), Expect = 0.40
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 32/158 (20%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM- 86
+ QVG+ LR ++ V +I+T Q + L M + VG++APQ+ + ++
Sbjct: 4 IAQVGEVILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERAVMIIA 63
Query: 87 -----------QLNPLQLANVPQAIVKS-------RGMEVIP-----------FTVRY-N 116
+ PL L N P+ I S G +P + Y
Sbjct: 64 SRPSPRYPNAPDMEPLVLIN-PKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEIEYLQ 122
Query: 117 EDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKT 154
DG P + + AR+ HE +HL GK ++D ++ T
Sbjct: 123 RDGTPATQRLDGFVARIFLHEFDHLIGKTWLDHVELNT 160
>UniRef50_A0LDD7 Cluster: Peptide deformylase; n=2;
Proteobacteria|Rep: Peptide deformylase - Magnetococcus
sp. (strain MC-1)
Length = 177
Score = 36.3 bits (80), Expect = 0.40
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 106 MEVIPFTVRYNE-DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD-IMDRK 153
M +V++ + G ++ + ARV QHE++HL+GKL+ D ++ RK
Sbjct: 112 MRATHISVQFQDRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRK 161
>UniRef50_Q74JW2 Cluster: Peptide deformylase; n=6;
Lactobacillales|Rep: Peptide deformylase - Lactobacillus
johnsonii
Length = 184
Score = 36.3 bits (80), Expect = 0.40
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRK 153
Y DG + +D+ A VA HEI+HL+G L+ D ++++
Sbjct: 133 YTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINKQ 171
>UniRef50_Q5LNI7 Cluster: Peptide deformylase; n=14;
Alphaproteobacteria|Rep: Peptide deformylase -
Silicibacter pomeroyi
Length = 165
Score = 35.9 bits (79), Expect = 0.52
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 50 TKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNP-----LQLAN--VPQAIVK 102
T EI+ + + M VG++APQIGV +R+ V+ + ++LAN + A ++
Sbjct: 25 TDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAVVDGSSERGRAVRLANPEILHASIE 84
Query: 103 SRGM-EVIP--------------FTVRY-NEDGNPTSNTYRDWAARVAQHEIEHLDGKLY 146
R E P TVR+ NE G + A QH+I+HL+G++Y
Sbjct: 85 LREHDEASPNLPGVSAKLKRPRAVTVRFLNEQGQVDRRDFVGIEATSVQHQIDHLNGRMY 144
Query: 147 VDIMDR 152
D + +
Sbjct: 145 FDNLSK 150
>UniRef50_Q38EE2 Cluster: Metalloprotease-like protein; n=6;
Trypanosomatidae|Rep: Metalloprotease-like protein -
Trypanosoma brucei
Length = 366
Score = 35.9 bits (79), Expect = 0.52
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 110 PFTVRYN---EDGNPTSNTYRDWAARVAQHEIEHLDGKLY 146
P TVR EDGNP T AR+A HE++HL+G L+
Sbjct: 193 PSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILF 232
>UniRef50_Q6FDC9 Cluster: Peptide deformylase; n=1; Acinetobacter
sp. ADP1|Rep: Peptide deformylase - Acinetobacter sp.
(strain ADP1)
Length = 160
Score = 35.5 bits (78), Expect = 0.69
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
V + G+ L+ + PV + ++ +Q L+ ++ M + VG++APQI V+ RI ++
Sbjct: 7 VAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVA 66
Query: 88 LNP 90
P
Sbjct: 67 SRP 69
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 113 VRY-NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
VRY + G + + AR+ QHEI+HL+G L+VD
Sbjct: 121 VRYFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVD 157
>UniRef50_Q1RIR7 Cluster: Polypeptide deformylase; n=2; Rickettsia
bellii|Rep: Polypeptide deformylase - Rickettsia bellii
(strain RML369-C)
Length = 195
Score = 35.5 bits (78), Expect = 0.69
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 120 NPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
N ++ Y W +R QHE++HLDG L++D
Sbjct: 144 NGNNSDYDLWFSRCLQHELDHLDGILFID 172
>UniRef50_Q8FT51 Cluster: Peptide deformylase 1; n=6; Actinobacteria
(class)|Rep: Peptide deformylase 1 - Corynebacterium
efficiens
Length = 169
Score = 35.5 bits (78), Expect = 0.69
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 32 GDPTLR-KVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ--- 87
GDP L + E V + + + TLI + M VG++A Q+GV R+FV
Sbjct: 10 GDPVLTSRADEVVDFD----ESLATLIDDMFDTMEDAGGVGLAANQVGVLRRVFVFDCSH 65
Query: 88 ---------LNPLQLANVPQAIVKSRGMEVIPF----TVRY--------NEDGNPTSNTY 126
+NP+ + G IP T RY + DGNP
Sbjct: 66 VDGGLRGHVVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRDGNPIGLVA 125
Query: 127 RDWAARVAQHEIEHLDGKLYVDIMD 151
+R QHE +HLDG L++ +D
Sbjct: 126 SGLLSRCIQHETDHLDGVLFLKRLD 150
>UniRef50_UPI0000519BDE Cluster: PREDICTED: similar to integrator
complex subunit 7 isoform 1; n=3; Endopterygota|Rep:
PREDICTED: similar to integrator complex subunit 7
isoform 1 - Apis mellifera
Length = 958
Score = 35.1 bits (77), Expect = 0.92
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 64 MNKYKSVGMSAPQIGVNMRIFVMQ--LNPLQLANVPQAIVK-SRGMEVIPFTVRYN---- 116
MN + G+ P+ N + + L ++ +AIV+ R E PF + N
Sbjct: 6 MNAFNDTGLGEPEQDANSALIELDKGLRSTKIGEQCEAIVRFPRLFEKYPFPILINSSLL 65
Query: 117 ---EDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCV 158
E SN R W RV Q +HLD L VD R+ S +
Sbjct: 66 KLAEVFRTGSNFLRVWVLRVCQQSEKHLDKILNVDEFVRRIYSVI 110
>UniRef50_A3EQQ7 Cluster: Peptide deformylase; n=1; Leptospirillum
sp. Group II UBA|Rep: Peptide deformylase -
Leptospirillum sp. Group II UBA
Length = 177
Score = 35.1 bits (77), Expect = 0.92
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 28 VVQVGDPTLR-KVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
++ GDP L K +E I+ +E+ + + ++ + +G++APQ+G NMR FV
Sbjct: 6 ILSYGDPRLLIKSTEVTRID----QEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVF 61
Query: 87 QLN 89
+N
Sbjct: 62 DMN 64
>UniRef50_A4RVA1 Cluster: Peptide deformylase, organellar; n=2;
Ostreococcus|Rep: Peptide deformylase, organellar -
Ostreococcus lucimarinus CCE9901
Length = 240
Score = 35.1 bits (77), Expect = 0.92
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 44 PIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM-------QLNPLQLANV 96
P+E K ++ L + +M + G++APQ+GVN R+ V Q + L N
Sbjct: 82 PVETFD-KNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAGEPGQGREVVLCN- 139
Query: 97 PQAIVKSRGMEV-----IPFTVRY--------------NEDGNPTSNTYRDWAARVAQHE 137
P+ + S+ ++ + F Y N G T + ARV QHE
Sbjct: 140 PEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKKFKMTLEGFEARVFQHE 199
Query: 138 IEHLDGKLYVDIMDRKTMSCV 158
+HLDG LY D M + + V
Sbjct: 200 YDHLDGVLYHDRMSPEVRASV 220
>UniRef50_Q9K4A0 Cluster: Peptide deformylase 4; n=2;
Streptomyces|Rep: Peptide deformylase 4 - Streptomyces
coelicolor
Length = 216
Score = 35.1 bits (77), Expect = 0.92
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRK 153
+E GNP + AR QHE +HL G LY+D + ++
Sbjct: 157 DEKGNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKR 194
>UniRef50_Q2J9M0 Cluster: Peptide deformylase; n=1; Frankia sp.
CcI3|Rep: Peptide deformylase - Frankia sp. (strain
CcI3)
Length = 230
Score = 34.7 bits (76), Expect = 1.2
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 31 VGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLN 89
VGDP LR P + + L+ + M VG++APQIGV +R+FV ++
Sbjct: 9 VGDPVLRT---PTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFVFDVD 64
Score = 34.3 bits (75), Expect = 1.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
G P AR QHE++HLDG LYVD
Sbjct: 159 GQPVEYAGEGLLARCFQHEVDHLDGILYVD 188
>UniRef50_A6G3Q1 Cluster: Putative polypeptide deformylase
protein; n=1; Plesiocystis pacifica SIR-1|Rep: Putative
polypeptide deformylase protein - Plesiocystis pacifica
SIR-1
Length = 192
Score = 34.7 bits (76), Expect = 1.2
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+ +VG P LR+V+ V E + T EIQ I L M G++A Q+ ++I ++
Sbjct: 7 IARVGAPVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPIQICALE 66
Query: 88 L 88
+
Sbjct: 67 V 67
>UniRef50_A4GJ38 Cluster: Peptide deformylase; n=1; uncultured
Nitrospinaceae bacterium|Rep: Peptide deformylase -
uncultured Nitrospinaceae bacterium
Length = 169
Score = 34.7 bits (76), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
N+ G + AR QHEI+HL+GKL++D
Sbjct: 118 NQKGEKLELQMSGYEARAVQHEIDHLNGKLFLD 150
>UniRef50_Q83AK6 Cluster: Peptide deformylase 2; n=3; Coxiella
burnetii|Rep: Peptide deformylase 2 - Coxiella burnetii
Length = 209
Score = 34.7 bits (76), Expect = 1.2
Identities = 12/23 (52%), Positives = 21/23 (91%)
Query: 126 YRDWAARVAQHEIEHLDGKLYVD 148
+R++++ + QHEI+HL+GK+YVD
Sbjct: 139 HREYSSVLWQHEIDHLEGKIYVD 161
>UniRef50_A7H8D4 Cluster: Peptide deformylase; n=5; Bacteria|Rep:
Peptide deformylase - Anaeromyxobacter sp. Fw109-5
Length = 185
Score = 34.3 bits (75), Expect = 1.6
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQ 92
DP L++V+ PV E + I+ L+ + M VG++APQI V R+ V+ +P Q
Sbjct: 10 DPILKEVANPV--ERVDDS-IRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVIDTSPRQ 66
>UniRef50_A6C970 Cluster: Peptide deformylase; n=1; Planctomyces
maris DSM 8797|Rep: Peptide deformylase - Planctomyces
maris DSM 8797
Length = 196
Score = 34.3 bits (75), Expect = 1.6
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Query: 24 PYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRI 83
P +V P LR S+PV ++I T E++ ++ + +M + + +G++A Q+ + R+
Sbjct: 2 PALQIVNYPHPALRWKSKPV--KSI-TPELRDIVRNMFDLMYEARGIGLAANQVALPYRL 58
Query: 84 FVMQLN------PLQLANVPQAIVKSRGME-------VIP-----------FTVR-YNED 118
FV+ L + + I K +G +P TV Y+ +
Sbjct: 59 FVINLTSDPNEPEEEFVFINPEITKRKGTAEGEEGCLSLPQVYGDVKRSEEITVEAYDLN 118
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
G T D AAR QHE +H++G ++ D M
Sbjct: 119 GQLFEITLDDLAARAVQHEHDHIEGIMFPDRM 150
>UniRef50_P63913 Cluster: Peptide deformylase; n=48;
Alphaproteobacteria|Rep: Peptide deformylase - Brucella
melitensis
Length = 175
Score = 34.3 bits (75), Expect = 1.6
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 28/141 (19%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL---- 88
DP LR+VS+PV + + ++ + + M +G++A Q+G +R+ V+ L
Sbjct: 11 DPVLRQVSKPVERFDDQLRKFASDMFD---TMYDAPGIGLAAIQVGEPIRMLVIDLAKEG 67
Query: 89 ---------NPLQLANVPQAIVKSRGMEVIP---------FTVRYN---EDGNPTSNTYR 127
NP + + + G IP TV+ N DG P S
Sbjct: 68 EPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGKPQSMEAD 127
Query: 128 DWAARVAQHEIEHLDGKLYVD 148
A QHEI+HL+G L++D
Sbjct: 128 GLMATCLQHEIDHLNGVLFID 148
>UniRef50_Q5GTG9 Cluster: Peptide deformylase; n=1; Wolbachia
endosymbiont strain TRS of Brugia malayi|Rep: Peptide
deformylase - Wolbachia sp. subsp. Brugia malayi (strain
TRS)
Length = 179
Score = 33.9 bits (74), Expect = 2.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 112 TVRYNEDGNPTSNTYRD-WAARVAQHEIEHLDGKLYV 147
TV+Y + N W AR QHE++HL+G LY+
Sbjct: 119 TVKYKDLNNKEQTLKASGWLARCIQHELDHLNGILYI 155
>UniRef50_Q8G487 Cluster: Peptide deformylase 2; n=4;
Actinobacteridae|Rep: Peptide deformylase 2 -
Bifidobacterium longum
Length = 162
Score = 33.9 bits (74), Expect = 2.1
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 28/144 (19%)
Query: 36 LRKVSEPV---PIENIK--TKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ--- 87
+R V +PV P + IK T ++ L+ L ++ G+SA QIGV++R F
Sbjct: 6 IRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFSYNIDG 65
Query: 88 -----LNPLQ------------LANVPQAIVKSRGMEVIPFTVR-YNEDGNPTSNTYRDW 129
LNP+ +VP K+R + VR + DGN
Sbjct: 66 KVGYVLNPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYA--RVRGIDLDGNEVVLEGSGL 123
Query: 130 AARVAQHEIEHLDGKLYVDIMDRK 153
R+ QHE +HLDG +Y+D ++++
Sbjct: 124 MGRMLQHECDHLDGHVYLDRLEKE 147
>UniRef50_Q6MJL6 Cluster: Polypeptide deformylase; n=1;
Bdellovibrio bacteriovorus|Rep: Polypeptide deformylase
- Bdellovibrio bacteriovorus
Length = 201
Score = 33.5 bits (73), Expect = 2.8
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 33 DPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNP 90
DP LR+VS+PV EI L + M +G++APQ+G +R+ V+ P
Sbjct: 10 DPKLREVSQPVKTFG---PEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVIDTRP 64
>UniRef50_Q0F0I6 Cluster: Peptide deformylase; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Peptide deformylase -
Mariprofundus ferrooxydans PV-1
Length = 180
Score = 33.5 bits (73), Expect = 2.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 150
++E G + + A QHE +HLDGKL++D +
Sbjct: 127 FDEHGVQHEQDFDGFQAVALQHEFDHLDGKLFIDYL 162
>UniRef50_A6W503 Cluster: Peptide deformylase; n=1; Kineococcus
radiotolerans SRS30216|Rep: Peptide deformylase -
Kineococcus radiotolerans SRS30216
Length = 200
Score = 33.5 bits (73), Expect = 2.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
GNP AR QHE +HLDG +YVD
Sbjct: 148 GNPVKIVGTGLLARCLQHESDHLDGVVYVD 177
>UniRef50_A6CAH7 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 937
Score = 33.5 bits (73), Expect = 2.8
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 6 KILNWYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMN 65
++L+W A HG SL +H++ D T ++ S PV E ++T + +L +
Sbjct: 645 ELLDWLATWFMDHGWSLKQLHHLIMTSD-TYQQSSHPVNAERVRTVDPSNRLL------S 697
Query: 66 KYKSVGMSAPQIGVNMRIFVMQLNP 90
+ + M+A Q+ ++ +LNP
Sbjct: 698 HFPTRRMTAEQLRDSLLSLTGELNP 722
>UniRef50_Q92HU7 Cluster: Peptide deformylase-like; n=5;
Rickettsia|Rep: Peptide deformylase-like - Rickettsia
conorii
Length = 183
Score = 33.5 bits (73), Expect = 2.8
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 27/153 (17%)
Query: 24 PYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRI 83
PY +V + +K +E + I + I+T++ K+ ++ ++VG+ A +G+ RI
Sbjct: 6 PYYQIVYAPNDIFKKQAEYIDIVD---DNIRTIVDKMLQNLHIERAVGLGANMVGILKRI 62
Query: 84 FVMQLN------PLQLANV--------PQAIVKSR----GMEVI-----PFTVRYNE-DG 119
V+ L+ P+ N Q ++ G+E V+Y + +G
Sbjct: 63 AVVDLHENNKSSPIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNG 122
Query: 120 NPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDR 152
N + A V QHEIE+L+GK ++D + +
Sbjct: 123 NKQELAAEGFLATVIQHEIEYLNGKTFLDSLSK 155
>UniRef50_Q47M56 Cluster: Peptide deformylase; n=7; Bacteria|Rep:
Peptide deformylase - Thermobifida fusca (strain YX)
Length = 185
Score = 33.1 bits (72), Expect = 3.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIF 84
+V GDP L + P+ N T + LI L ++ G++APQIGV +R F
Sbjct: 6 IVLFGDPVLSTPAAPITTFNRHT---EALIRDLMDTVDAPGRAGVAAPQIGVGLRAF 59
>UniRef50_Q0EWE9 Cluster: Polypeptide deformylase; n=1;
Mariprofundus ferrooxydans PV-1|Rep: Polypeptide
deformylase - Mariprofundus ferrooxydans PV-1
Length = 169
Score = 33.1 bits (72), Expect = 3.7
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 113 VRYNE-DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
V Y++ G+ S + ARV QHE++HLDG L++D
Sbjct: 121 VSYDDVHGDRLSLESTGFEARVIQHELDHLDGILFID 157
>UniRef50_A4EF54 Cluster: Peptide deformylase; n=2;
Rhodobacteraceae|Rep: Peptide deformylase - Roseobacter
sp. CCS2
Length = 153
Score = 33.1 bits (72), Expect = 3.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 32 GDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVM 86
GDP L + + PV + + TL+ + M G++APQ+GV+ R+FV+
Sbjct: 10 GDPVLLETAAPVEAFDAS---LATLVRDMFETMYDAPGRGLAAPQVGVSRRVFVV 61
>UniRef50_A5FVG7 Cluster: Peptide deformylase; n=1; Acidiphilium
cryptum JF-5|Rep: Peptide deformylase - Acidiphilium
cryptum (strain JF-5)
Length = 209
Score = 32.3 bits (70), Expect = 6.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLY 146
G P S + ARV QHE +HLDG LY
Sbjct: 152 GAPFSREAAGFHARVIQHEADHLDGILY 179
>UniRef50_A3XHJ5 Cluster: Putative polypeptide deformylase protein;
n=1; Leeuwenhoekiella blandensis MED217|Rep: Putative
polypeptide deformylase protein - Leeuwenhoekiella
blandensis MED217
Length = 219
Score = 32.3 bits (70), Expect = 6.5
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 113 VRYNE-DGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
V Y++ D + D+ A V QHEI+HL+G LY+D
Sbjct: 163 VEYDKPDASHEIEMVEDFTAVVFQHEIDHLNGILYLD 199
>UniRef50_A3M399 Cluster: Peptide deformylase 2; n=1; Acinetobacter
baumannii ATCC 17978|Rep: Peptide deformylase 2 -
Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
755)
Length = 122
Score = 32.3 bits (70), Expect = 6.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 119 GNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
G + + AR+ QHE++HL+G L+V+
Sbjct: 90 GEAVETIFHGFPARIVQHEVDHLNGILFVE 119
>UniRef50_A3I5Q3 Cluster: Peptide deformylase; n=3; Firmicutes|Rep:
Peptide deformylase - Bacillus sp. B14905
Length = 192
Score = 32.3 bits (70), Expect = 6.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDR 152
YN DG + + + + V QHEI+HL+G ++ D +++
Sbjct: 139 YNIDGQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176
>UniRef50_Q7XYP8 Cluster: Peptide deformylase; n=1; Bigelowiella
natans|Rep: Peptide deformylase - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 315
Score = 32.3 bits (70), Expect = 6.5
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 27 HVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFV 85
+V++ DP LR +E + K +Q L ++ VM G++APQ+G+N R+ V
Sbjct: 123 NVIKYPDPRLRTENEKITEFG---KPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMV 178
>UniRef50_Q8II31 Cluster: Putative uncharacterized protein; n=4;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 366
Score = 32.3 bits (70), Expect = 6.5
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 108 VIPFTVRYNEDGNPTSNT-YRDWAARVAQHEIEHLDGKLYVDI 149
V+P T++YN+ G N+ + +W A + I+ L GKLY+ +
Sbjct: 262 VLPQTLKYNQAGKAIENSHFINWMIPSALNYIKRLYGKLYIPL 304
>UniRef50_Q7QUP0 Cluster: GLP_47_33632_31947; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_47_33632_31947 - Giardia lamblia
ATCC 50803
Length = 561
Score = 32.3 bits (70), Expect = 6.5
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 5 RKILNWYARLSPKHGVSLPPYNHVVQVGDPTLRKVSEPVPIENIKTK-EIQTLILKLR 61
RK+L + +L+P +++ P H++++ L+KVSE +E + E +LI ++
Sbjct: 262 RKVLGYLLKLNPHERITVMPLLHILELYRDNLKKVSEIKELEEAARRLEQDSLIFMMK 319
>UniRef50_Q98PN3 Cluster: Peptide deformylase; n=5; Mycoplasma|Rep:
Peptide deformylase - Mycoplasma pulmonis
Length = 198
Score = 32.3 bits (70), Expect = 6.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 127 RDWAARVAQHEIEHLDGKLYVDIMDRKTM 155
+ + A V QHE++HL+G L++D +D K +
Sbjct: 161 KGYVAIVFQHELDHLNGMLFIDRIDPKRL 189
>UniRef50_Q1QTJ5 Cluster: Peptide deformylase; n=9;
Proteobacteria|Rep: Peptide deformylase -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 170
Score = 32.3 bits (70), Expect = 6.5
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 26/146 (17%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+++ D LR + PV + +T+++ +L+ M + +G++A Q+ V+ R+ VM
Sbjct: 6 ILEFPDERLRTKAAPVETVDDETRKLVDDMLE---TMYDAQGIGLAATQVDVHRRVIVMD 62
Query: 88 LN-----PLQLAN---VPQAIVKSRGME----------VIPFTVRYN-----EDGNPTSN 124
++ P L N P + E +P +R + DGNP
Sbjct: 63 VSDDRSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGNPYEL 122
Query: 125 TYRDWAARVAQHEIEHLDGKLYVDIM 150
A QHE +HL+G L+VD +
Sbjct: 123 EADGLLAHCIQHEYDHLEGVLFVDYL 148
>UniRef50_Q4S9Q3 Cluster: Chromosome 2 SCAF14695, whole genome
shotgun sequence; n=3; Clupeocephala|Rep: Chromosome 2
SCAF14695, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 652
Score = 31.9 bits (69), Expect = 8.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 126 YRDWAARVAQHEIEHLDG-KLYVDIMDRKTMSCVCWEEVNLSKG 168
Y D+A+ +++ +E + G K VDI K +SCVC +E + G
Sbjct: 348 YSDFASSLSKEILESVCGYKSAVDISHNKNLSCVCHKEFRNTSG 391
>UniRef50_Q8JKR5 Cluster: P91 capsid protein; n=1; Heliothis zea
virus 1|Rep: P91 capsid protein - Heliothis zea virus 1
Length = 831
Score = 31.9 bits (69), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 90 PLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRD 128
P +LA+ +K G + FT RYN+D N N Y D
Sbjct: 38 PRELADFISTHMKKNGTFTVAFTYRYNKDTNKYENYYVD 76
>UniRef50_Q5PBF5 Cluster: Peptide deformylase; n=7;
Anaplasmataceae|Rep: Peptide deformylase - Anaplasma
marginale (strain St. Maries)
Length = 196
Score = 31.9 bits (69), Expect = 8.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 128 DWAARVAQHEIEHLDGKLYVDIMD 151
+W AR QHE++HL+G L +++D
Sbjct: 146 NWLARCIQHEMDHLNGVLLANLVD 169
>UniRef50_Q40J94 Cluster: Peptide deformylase; n=8;
Anaplasmataceae|Rep: Peptide deformylase - Ehrlichia
chaffeensis str. Sapulpa
Length = 188
Score = 31.9 bits (69), Expect = 8.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 118 DGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDR 152
+GN + W AR QHEI+HL+G +++ + +
Sbjct: 135 NGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSK 169
>UniRef50_A6Q676 Cluster: Peptide deformylase; n=1; Sulfurovum sp.
NBC37-1|Rep: Peptide deformylase - Sulfurovum sp.
(strain NBC37-1)
Length = 174
Score = 31.9 bits (69), Expect = 8.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 115 YNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVD 148
Y+ +G D+ A QHEI+HLDGK++++
Sbjct: 120 YDRNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIE 153
>UniRef50_A5US58 Cluster: Peptide deformylase; n=4;
Chloroflexaceae|Rep: Peptide deformylase - Roseiflexus
sp. RS-1
Length = 185
Score = 31.9 bits (69), Expect = 8.5
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 28 VVQVGDPTLRKV----SEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRI 83
++++ +P +K+ PV + N K+ L+ + M+ VG++APQIG+ R+
Sbjct: 6 ILRIDNPDDKKILTTRCHPVRLPNPALKQ---LVADMFETMHAASGVGLAAPQIGITQRL 62
Query: 84 FVMQLNPL 91
V+ + P+
Sbjct: 63 AVISIPPV 70
>UniRef50_A3HVV2 Cluster: Peptide deformylase; n=1; Algoriphagus
sp. PR1|Rep: Peptide deformylase - Algoriphagus sp. PR1
Length = 161
Score = 31.9 bits (69), Expect = 8.5
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILK--LRFVMNKYK-SVGMSAPQIGVNMRIF 84
++++GDP L +V +PV ++ I T L + + Y G++APQ+G+ R+F
Sbjct: 7 ILKLGDPRLYEVCDPVLKSELEQVPIWTQQLHEAMEDIRKAYGFGRGIAAPQLGIMKRMF 66
Query: 85 VMQLN 89
+ L+
Sbjct: 67 YLNLD 71
>UniRef50_A1WWW4 Cluster: Peptide deformylase; n=1; Halorhodospira
halophila SL1|Rep: Peptide deformylase - Halorhodospira
halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 162
Score = 31.9 bits (69), Expect = 8.5
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 28 VVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQ 87
+++ DP LR+ S PV E + + L+ + M+ ++G++APQ+ V RI V
Sbjct: 6 ILEHPDPRLRQPSAPV--ERFD-QALCELVDDMIETMHARSAIGLAAPQVDVRQRIVVCC 62
Query: 88 LNPLQLANV 96
P Q V
Sbjct: 63 TEPAQAPRV 71
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,506,935
Number of Sequences: 1657284
Number of extensions: 7486351
Number of successful extensions: 16545
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 16293
Number of HSP's gapped (non-prelim): 273
length of query: 177
length of database: 575,637,011
effective HSP length: 96
effective length of query: 81
effective length of database: 416,537,747
effective search space: 33739557507
effective search space used: 33739557507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 69 (31.9 bits)
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