GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002546-TA|BGIBMGA002546-PA|IPR000181|Formylmethionine
deformylase
         (177 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    24   0.62 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.6  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.62
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 3   ITRKILNWY-ARLSP-KHGVSLPPYNHVVQVGDPTLRKVSEPV 43
           +   ++NW  A   P K  + L  Y H  Q+ DP    +  PV
Sbjct: 236 VNSTVVNWVNAGADPGKLTIGLAFYGHTFQLADPAQHDLGAPV 278


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 13  RLSPKHGVSLPPYNHV 28
           +LSPK   SLPP N++
Sbjct: 221 KLSPKSASSLPPGNNI 236


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 13  RLSPKHGVSLPPYNHV 28
           +LSPK   SLPP N++
Sbjct: 169 KLSPKSASSLPPGNNI 184


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 13  RLSPKHGVSLPPYNHV 28
           +LSPK   SLPP N++
Sbjct: 352 KLSPKSASSLPPGNNI 367


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 110 PFTVRYNEDGNPTSNTY 126
           PF VR  E+ NP +  Y
Sbjct: 192 PFIVRVPEEDNPHAKLY 208


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 24  PYNHVVQVGDPTLRKVSEPVP 44
           P  H+V+VG    R +S P P
Sbjct: 154 PTVHLVRVGTEPRRVISFPFP 174


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 120 NPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKLA 171
           N   N  +   A + Q E  HLD      +  R  M+    + +NL   K+A
Sbjct: 102 NSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIA 153


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,194
Number of Sequences: 317
Number of extensions: 1647
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 177
length of database: 114,650
effective HSP length: 53
effective length of query: 124
effective length of database: 97,849
effective search space: 12133276
effective search space used: 12133276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)