Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002546-TA|BGIBMGA002546-PA|IPR000181|Formylmethionine
deformylase
(177 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0326 - 20950452-20950692,20950796-20950863,20950975-209510... 49 2e-06
01_06_0013 - 25579904-25580002,25580373-25580435,25580803-255809... 29 1.6
01_06_0005 - 25514039-25514137,25514508-25514570,25514937-255150... 29 1.6
11_03_0139 + 10632020-10632211,10632876-10632937,10633141-106331... 27 6.5
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223... 27 8.6
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 27 8.6
>01_05_0326 -
20950452-20950692,20950796-20950863,20950975-20951064,
20951237-20951620
Length = 260
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 29 VQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL 88
V+ GDP L + ++ V +I ++++Q +I ++ VM K VG++APQIGV ++I V++
Sbjct: 75 VKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLED 134
Query: 89 NPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTS 123
++ P+ ++++ V N TS
Sbjct: 135 TQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTS 169
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 116 NEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCV 158
+ +G P W AR+ QHE +HL+G LYVD M +T V
Sbjct: 201 DRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIV 243
>01_06_0013 -
25579904-25580002,25580373-25580435,25580803-25580913,
25581708-25581968,25582156-25582201,25582365-25582503,
25582612-25582816
Length = 307
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 130 AARVAQHEIEHLDGKLYVDIMDRKTMSCV 158
+ARV QHE +HL G L+ D M + V
Sbjct: 242 SARVFQHEFDHLQGILFFDRMSLDVLESV 270
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 70 VGMSAPQIGVNMRIFVMQLNPLQLANVPQAIV 101
+G+SAPQ+GVN+++ V NP + + IV
Sbjct: 157 IGLSAPQVGVNVQLMV--FNPAGVKGEGEEIV 186
>01_06_0005 -
25514039-25514137,25514508-25514570,25514937-25515047,
25515843-25516103,25516293-25516338,25516504-25516904
Length = 326
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 130 AARVAQHEIEHLDGKLYVDIMDRKTMSCV 158
+ARV QHE +HL G L+ D M + V
Sbjct: 261 SARVFQHEFDHLQGILFFDRMSLDVLESV 289
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 70 VGMSAPQIGVNMRIFVMQLNPLQLANVPQAIV 101
+G+SAPQ+GVN+++ V NP + + IV
Sbjct: 176 IGLSAPQVGVNVQLMV--FNPAGVKGEGEEIV 205
>11_03_0139 +
10632020-10632211,10632876-10632937,10633141-10633181,
10633667-10633883,10634229-10634271
Length = 184
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 87 QLNPLQLANVPQAIVKSRGMEVIPFTVRYNED----GNPTSNTYRDW 129
+L P Q+ N P+ ++ R M + V + D NPT Y W
Sbjct: 39 ELKPSQVLNQPRIYIEGRDMRTLYTLVMVDPDAPSPSNPTKREYLHW 85
>10_08_0999 +
22121029-22121235,22121819-22122082,22122123-22122324,
22122456-22122590,22122668-22122778,22122871-22122959,
22123237-22123299,22123461-22123636,22123785-22123887,
22124286-22124461,22124625-22124733,22124851-22124943,
22126294-22126435,22126655-22126671
Length = 628
Score = 27.1 bits (57), Expect = 8.6
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 69 SVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPT-SNTYR 127
++ + Q+ + R VMQ ++ +VP+ I+ G E FT++ T S Y
Sbjct: 151 AIMLDTKQMSCDDRTSVMQGPEVRSGDVPEPIMLEEGQE-FNFTIKRGVSTKDTVSVNYD 209
Query: 128 DWAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
D+ V +I +DG + + KT V E V+
Sbjct: 210 DFINDVEVGDILLVDGGMMSLAVKSKTADTVKCEVVD 246
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 60 LRFVMNK-YKSVGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVK--SRGMEVIPFTVRYN 116
LR ++NK + G AP+I ++M++ +L + +K + +EVIP+T+ N
Sbjct: 423 LRCLVNKRFLIAGGGAPEIEMSMQLAAWAK---ELQGMESYCIKEFAEALEVIPYTLAEN 479
Query: 117 EDGNPTS 123
NP S
Sbjct: 480 AGLNPIS 486
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,096,900
Number of Sequences: 37544
Number of extensions: 191263
Number of successful extensions: 394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 14,793,348
effective HSP length: 77
effective length of query: 100
effective length of database: 11,902,460
effective search space: 1190246000
effective search space used: 1190246000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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