GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002546-TA|BGIBMGA002546-PA|IPR000181|Formylmethionine
deformylase
         (177 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            24   2.3  
AJ000502-1|CAA04136.1|  299|Anopheles gambiae iron regulatory pr...    23   7.0  
AY333999-1|AAR01124.1|  268|Anopheles gambiae FBN23 protein.           22   9.3  

>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 88  LNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEH 140
           ++PLQ+A V       + ++ +   +  + + +  S  Y+ W A+     + H
Sbjct: 664 ISPLQMATVLDKYFFPKWLQTLVIWLNQSPNFDQVSRWYQGWKAQFTDDVVRH 716


>AJ000502-1|CAA04136.1|  299|Anopheles gambiae iron regulatory
           protein protein.
          Length = 299

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 131 ARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVNLSKGKL 170
           A +   E +H+   ++ D+ ++  +    W+ +N   GKL
Sbjct: 4   AEIQTVEQKHVIPAMFRDVYEKVELGSDSWQGLNAPTGKL 43


>AY333999-1|AAR01124.1|  268|Anopheles gambiae FBN23 protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 45  IENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL 88
           I  I   +I  L+++L+    KYK    S  +IG  +  + +++
Sbjct: 213 IHRITAAQIHELLVELKDFSGKYKYARYSVFKIGSEVEQYSLKM 256


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,637
Number of Sequences: 2123
Number of extensions: 6718
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 516,269
effective HSP length: 60
effective length of query: 117
effective length of database: 388,889
effective search space: 45500013
effective search space used: 45500013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)