GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002546-TA|BGIBMGA002546-PA|IPR000181|Formylmethionine
deformylase
         (177 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019912-1|AAH19912.1|  243|Homo sapiens peptide deformylase (mi...    67   4e-11
AF322879-1|AAK15624.1|  243|Homo sapiens polypeptide deformylase...    67   4e-11
AF239156-1|AAG33968.1|  243|Homo sapiens peptide deformylase-lik...    67   4e-11

>BC019912-1|AAH19912.1|  243|Homo sapiens peptide deformylase
           (mitochondrial) protein.
          Length = 243

 Score = 66.9 bits (156), Expect = 4e-11
 Identities = 36/94 (38%), Positives = 50/94 (53%)

Query: 23  PPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMR 82
           PP++HV QVGDP LR V+ PV    +   E+Q L  +L  VM + + VG+SAPQ+GV  +
Sbjct: 62  PPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 121

Query: 83  IFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
           +  ++L        P      R ME  P  V  N
Sbjct: 122 VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155



 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 129 WAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
           WAAR+ QHE++HL G L++D MD +T + V W +VN
Sbjct: 207 WAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242


>AF322879-1|AAK15624.1|  243|Homo sapiens polypeptide
           deformylase-like protein protein.
          Length = 243

 Score = 66.9 bits (156), Expect = 4e-11
 Identities = 36/94 (38%), Positives = 50/94 (53%)

Query: 23  PPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMR 82
           PP++HV QVGDP LR V+ PV    +   E+Q L  +L  VM + + VG+SAPQ+GV  +
Sbjct: 62  PPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 121

Query: 83  IFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
           +  ++L        P      R ME  P  V  N
Sbjct: 122 VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155



 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 129 WAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
           WAAR+ QHE++HL G L++D MD +T + V W +VN
Sbjct: 207 WAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242


>AF239156-1|AAG33968.1|  243|Homo sapiens peptide deformylase-like
           protein protein.
          Length = 243

 Score = 66.9 bits (156), Expect = 4e-11
 Identities = 36/94 (38%), Positives = 50/94 (53%)

Query: 23  PPYNHVVQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMR 82
           PP++HV QVGDP LR V+ PV    +   E+Q L  +L  VM + + VG+SAPQ+GV  +
Sbjct: 62  PPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 121

Query: 83  IFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYN 116
           +  ++L        P      R ME  P  V  N
Sbjct: 122 VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155



 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 129 WAARVAQHEIEHLDGKLYVDIMDRKTMSCVCWEEVN 164
           WAAR+ QHE++HL G L++D MD +T + V W +VN
Sbjct: 207 WAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,121,133
Number of Sequences: 224733
Number of extensions: 975597
Number of successful extensions: 1416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 73,234,838
effective HSP length: 85
effective length of query: 92
effective length of database: 54,132,533
effective search space: 4980193036
effective search space used: 4980193036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)