GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002546-TA|BGIBMGA002546-PA|IPR000181|Formylmethionine
deformylase
         (177 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64849-7|AAC48048.1|  307|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    28   4.3  
Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic acety...    27   5.7  
U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine r...    27   5.7  

>U64849-7|AAC48048.1|  307|Caenorhabditis elegans Hypothetical
           protein K04A8.2 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 38  KVSEPV--PIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQLNPLQLAN 95
           K+SE +  P E +      T  L + + M+ ++  GMS   IG  +RI  ++ N L++  
Sbjct: 110 KISELMEYPKEKLADVAYHTEALSVFYAMDTHRLDGMSGVVIGRALRILTVEYNTLEI-- 167

Query: 96  VPQAIVKSRGMEVIP 110
             Q   K+R   ++P
Sbjct: 168 --QETFKNRLSSILP 180


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 81  MRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEH 140
           +RIF  + N L +A+    ++K   M+V  F     E     + T+++ AARV+  + ++
Sbjct: 272 VRIFADKPNKLIMAHELLVVMKQEHMDVSSFEKEVLEMPKLATFTFQEVAARVSPEDFKN 331

Query: 141 LD 142
           ++
Sbjct: 332 IE 333


>Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic
           acetylcholine receptorsubunit ACR-3 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 96  VPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMD 151
           VP A+ KS  +  + F   +  D    S T+  W  R  + ++ +L GK +V++ D
Sbjct: 142 VPPAVYKSSCLIDVEF---FPFDEQVCSLTFGSWTFRKDELQLSYLSGKRHVELND 194


>U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine
           receptor protein 3 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 96  VPQAIVKSRGMEVIPFTVRYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMD 151
           VP A+ KS  +  + F   +  D    S T+  W  R  + ++ +L GK +V++ D
Sbjct: 142 VPPAVYKSSCLIDVEF---FPFDEQVCSLTFGSWTFRKDELQLSYLSGKRHVELND 194


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,414,417
Number of Sequences: 27539
Number of extensions: 172112
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 12,573,161
effective HSP length: 77
effective length of query: 100
effective length of database: 10,452,658
effective search space: 1045265800
effective search space used: 1045265800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)