GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002545-TA|BGIBMGA002545-PA|undefined
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   2.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   2.7  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   3.5  
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    25   4.7  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   4.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    24   8.2  
SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   8.2  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 12  LDTFVLVILMLAMVNSENDF----YGLCSQMSSVLVTVVLMAFFMWTAGDINVQASQLPD 67
           L+  + V + LA V   N F    YG C  +SS L  V+++ FF + A  IN  A+    
Sbjct: 181 LNPAIWVTIFLAYVVLVNAFGARSYGECEFVSSFLKVVIVIIFF-FVAIIINCGAAPKGG 239

Query: 68  AIYGSGWYN 76
            I    W++
Sbjct: 240 YIGAHYWHH 248


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 28  ENDFYGLCSQMSSVLVTVVLMAFFMWTAGDINVQASQLPDAIYGSGWYNCRGK 80
           E +F+  C  +      +V +A  + +A D N++AS +P      G ++C  K
Sbjct: 102 ETNFWSACKNLEKDKKVIVPLAEPL-SAKDTNLRASFVPPKTVTPGIFSCSNK 153


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 101 TRMYGSNKQSNYNMFSGVF 119
           T MYG + Q  Y+M +GV+
Sbjct: 447 TNMYGQSNQDPYSMSNGVY 465


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 71  GSGWYNCRG-KSSARIRSLVTISMNKAQVILTRMYGSNKQSNYNMFSGV 118
           G  W   RG  S  R R   TISM K        YG+NK++ Y M +G+
Sbjct: 26  GESWRKPRGIDSCVRRRFRGTISMPKIG------YGNNKKTRYCMPNGL 68


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 71  GSGWYNCRG-KSSARIRSLVTISMNKAQVILTRMYGSNKQSNYNMFSGV 118
           G  W   RG  S  R R   TISM K        YG+NK++ Y M +G+
Sbjct: 26  GESWRKPRGIDSCVRRRFRGTISMPKIG------YGNNKKTRYCMPNGL 68


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 68  AIYGSGWYNCRGKSSARIRSLVTISMNKAQVILTRMYGSNKQSNY 112
           ++ G  +++C       +R+  +  M +  V+ +R  GS   SN+
Sbjct: 47  SVKGKRYFSCEKGKGIFVRACSSNVMKRPSVVKSRKKGSENISNF 91


>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 44

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 11 MLDTFVLVILMLAMVNSENDFYGLCSQM 38
          M+  F+L I +   V S+N FY +C++M
Sbjct: 14 MIIYFLLQISISRCVFSKNGFYHVCNKM 41


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,062
Number of Sequences: 5004
Number of extensions: 13388
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 7
length of query: 125
length of database: 2,362,478
effective HSP length: 65
effective length of query: 60
effective length of database: 2,037,218
effective search space: 122233080
effective search space used: 122233080
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 49 (23.8 bits)