GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002545-TA|BGIBMGA002545-PA|undefined
         (125 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0404 - 23153454-23154305,23154335-23155627                       27   4.4  
09_06_0037 + 20389976-20391016,20391103-20391723                       27   4.4  
08_02_0690 + 20071280-20071531,20071613-20071792,20071963-20072253     27   5.8  
05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411...    26   7.7  
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286...    26   7.7  

>11_06_0404 - 23153454-23154305,23154335-23155627
          Length = 714

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 33  GLCSQMSSVLVTVVLMAFFMWTAGDINVQASQLPDAI 69
           GL S   SVL ++  +   +W A  +N     LPD +
Sbjct: 134 GLASLSLSVLQSLAALGLALWLASGVNRVKKDLPDPV 170


>09_06_0037 + 20389976-20391016,20391103-20391723
          Length = 553

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 51  FMWTAGDINVQASQLPDAIYGSGWYNCRGKSSA 83
           F+  A + +V  S L  A +GSG  +C GKS A
Sbjct: 468 FIGKAAEFSVMGSDLRLAPFGSGRRSCPGKSLA 500


>08_02_0690 + 20071280-20071531,20071613-20071792,20071963-20072253
          Length = 240

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 4   TVFSANIMLDTFVLVILMLAMVNSENDFYGLCSQM-SSVLVTVVLMAF 50
           T+   +I L  FVL++ + A+V  ++   G C +M  SV+  V L+ F
Sbjct: 162 TICVGSIALMAFVLLVSLGALVKGDSAAKGSCREMIGSVIGDVGLVGF 209


>05_04_0193 +
           18939869-18939988,18940714-18941012,18941078-18941186,
           18941874-18941999,18942178-18942218,18942614-18942744,
           18943218-18943291,18944215-18944450,18944543-18944863,
           18945023-18945086
          Length = 506

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 61  QASQLPDAIYGSGWYNCRGKSSARIRSLVTISMNKAQVILTRMY 104
           ++SQ PD +Y   +   +  S+  +RSL  ++ + A  +L+RM+
Sbjct: 319 KSSQWPDMVYLPDYVEYQFVSAPPLRSLFPMASDDALDLLSRMF 362


>01_06_1250 +
           35726115-35726255,35727435-35727479,35728570-35728692,
           35728804-35728911,35729247-35729360,35729440-35729613,
           35729881-35729976,35730165-35730272,35730389-35730496,
           35730595-35730743,35731255-35731408,35732487-35732647,
           35733739-35733945,35733968-35734025,35734058-35734222,
           35734305-35734388,35735670-35735863,35735952-35736011,
           35736203-35736407
          Length = 817

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 45  VVLMAFFMWTAGDINVQASQLPDAIYGSGWYNCRGK--SSARIRSLVTI 91
           ++LMA F    G I  +   +P  I+G   Y CR K  S A    L+ +
Sbjct: 456 ILLMALFSIYCGLIYNEFFSVPFHIFGKSAYECREKTCSDAHTAGLIKV 504


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,440
Number of Sequences: 37544
Number of extensions: 83785
Number of successful extensions: 205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 5
length of query: 125
length of database: 14,793,348
effective HSP length: 74
effective length of query: 51
effective length of database: 12,015,092
effective search space: 612769692
effective search space used: 612769692
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)