GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002545-TA|BGIBMGA002545-PA|undefined
         (125 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-9|AAB52353.1|  351|Caenorhabditis elegans Hypothetical pr...    33   0.060
U12964-1|AAL02497.1|  465|Caenorhabditis elegans Hypothetical pr...    30   0.56 
AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical ...    28   2.3  
U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical ...    26   6.9  

>U97016-9|AAB52353.1|  351|Caenorhabditis elegans Hypothetical
           protein B0261.7 protein.
          Length = 351

 Score = 33.1 bits (72), Expect = 0.060
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 76  NCRGKSSARIRSLVTISMNKAQVILTRMYGSNKQS 110
           NCR +S   ++ L  +S+N  Q IL +  GSNK S
Sbjct: 194 NCRTESDVYVKKLAGLSLNCFQDILAKFKGSNKDS 228


>U12964-1|AAL02497.1|  465|Caenorhabditis elegans Hypothetical
           protein F26F4.5 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 25  VNSENDFYGLCSQMSSVLVTVVLMAFFMWTAGDINVQASQLPDAIYGSGWYNCR 78
           +  E+D+  L SQ  + L   VL+   MW    + + + QL  + + S W +CR
Sbjct: 323 IYDEDDWVNLTSQHKNTLRRNVLL---MWVQEKLELYSDQLTVSNFSSDWTDCR 373


>AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical
           protein F52F10.4 protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 15  FVLVILMLAMVNSENDF-----YGLCSQMSSVLVTVVLMAFFMWTAGDI 58
           F++V++++A + S  D+     YGL SQ  +     +L+ F +WT  ++
Sbjct: 185 FLIVMVVIAAIASIVDYVRETVYGLSSQKENNTFFKILLTFSLWTNAEL 233


>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 55  AGDINVQASQLPDAIYGSGWYNCRGKSSA 83
           +GD+++Q  +  D    SGWY C  K+SA
Sbjct: 178 SGDLSLQDVRKSD----SGWYTCEAKNSA 202


>AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical
           protein C24F3.4 protein.
          Length = 703

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 52  MWTAGDINVQ-ASQLPDAIY-GSGWYNCRGKSSARIRSLVTISMNK 95
           +W+A   NV+ A Q  D +  GSG ++  GKS+ RI  L+  S  K
Sbjct: 181 LWSARSTNVRLAEQGVDIMCNGSGSHHILGKSNYRINQLILGSSAK 226


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,714
Number of Sequences: 27539
Number of extensions: 73849
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 5
length of query: 125
length of database: 12,573,161
effective HSP length: 73
effective length of query: 52
effective length of database: 10,562,814
effective search space: 549266328
effective search space used: 549266328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)