GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002545-TA|BGIBMGA002545-PA|undefined
         (125 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.5  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 88  LVTISMNKAQVILTRMY 104
           LV IS NK+ V  TR+Y
Sbjct: 116 LVHISTNKSDVKATRVY 132


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 49  AFFMWTAGDINVQASQLPDAIYGSGWYNCRGKSSARIRSLVTIS-----MNKAQVI 99
           A ++W   +  + AS  P+ + G    N   +++    SL+ ++     MNK++ I
Sbjct: 256 AGYVWIVTEQALDASNAPEGLLGLKLINAENETAHIKDSLIVLTSALQEMNKSKSI 311


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
          variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 75 YNCRGKSSARIRSLVTISMNK 95
          Y C G+S+  I  + + S NK
Sbjct: 62 YECEGRSAGSIPGVNSTSENK 82


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein
          protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 75 YNCRGKSSARIRSLVTISMNK 95
          Y C G+S+  I  + + S NK
Sbjct: 62 YECEGRSAGSIPGVNSTSENK 82


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 60  VQASQLPD-AIYGSGWYNCRGKSSARIRSLVTISMN 94
           ++A  L D  IY     N  G++SA IR +VT  ++
Sbjct: 297 LEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLH 332


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 60  VQASQLPD-AIYGSGWYNCRGKSSARIRSLVTISMN 94
           ++A  L D  IY     N  G++SA IR +VT  ++
Sbjct: 297 LEAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLH 332


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,779
Number of Sequences: 429
Number of extensions: 766
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 125
length of database: 140,377
effective HSP length: 51
effective length of query: 74
effective length of database: 118,498
effective search space:  8768852
effective search space used:  8768852
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.3 bits)
S2: 39 (19.8 bits)