GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002543-TA|BGIBMGA002543-PA|IPR000299|Band 4.1
         (97 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       21   2.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   5.3  

>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 17 QQTTTGKQLFDQVVKTIGLREV 38
          Q+T  GK+LF+ +++T  +  V
Sbjct: 5  QRTGLGKRLFEHMLQTESIEPV 26


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 42  GLQYTDSKGDLTWIKLYKKVG 62
           GL Y D  G  +W    KK G
Sbjct: 141 GLVYNDKAGICSWPDEAKKKG 161


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907
Number of Sequences: 317
Number of extensions: 712
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 97
length of database: 114,650
effective HSP length: 48
effective length of query: 49
effective length of database: 99,434
effective search space:  4872266
effective search space used:  4872266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)