GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002543-TA|BGIBMGA002543-PA|IPR000299|Band 4.1
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   0.68 
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    25   2.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   2.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   2.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    24   4.8  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    23   8.4  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 27  DQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVGKKGMQTIRVRFS-VGES 78
           D V +TI  RE   F L+YTD  G   +    + +G+   +++ V ++ +GES
Sbjct: 194 DPVRRTIA-REFKNFLLEYTDENGTSVYGNRIRTLGEVNAESLMVNYAHLGES 245


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 45  YTDSKGDLTWIKLYKKVGKKGMQTIR 70
           YT +KGD++++K  K++ +   Q +R
Sbjct: 153 YTKAKGDVSFLKFQKRLSRAPDQIMR 178


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 37  EVWFFGLQYTDSKGDLTWIKLYKKVGKKG 65
           ++WF  L+ T+ K  + WI    K+  +G
Sbjct: 916 QIWFLSLRLTERKKFVPWILRGLKLASEG 944


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 17/69 (24%), Positives = 33/69 (47%)

Query: 23  KQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVGKKGMQTIRVRFSVGESIFVK 82
           KQL D++++   L+E+  F    TD +      ++ +  G K +   +   S  E + +K
Sbjct: 897 KQLLDRMLRVFSLKELEAFAENETDKEWLQRIWRVRRSRGDKKVVDNKRDASDSEDLAIK 956

Query: 83  NSCSCFSKV 91
           N  +  +KV
Sbjct: 957 NPMNKKAKV 965


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 56  KLYKKVGKKGMQTIRVRFSVGESIFVKNSCSCFSKVS 92
           K+YK  G+KG + + + +   ++   +N  S  S+ S
Sbjct: 633 KIYKDYGRKGSRVLALGYKYFKNYIPENQVSDLSRES 669


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 57  LYKKVGKKGMQTIRVRFSVGESIFVKN 83
           L KK+ K   Q + + +  G+S+F KN
Sbjct: 128 LEKKITKYTSQPVDIHWKPGKSLFRKN 154


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,771
Number of Sequences: 5004
Number of extensions: 13275
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 6
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)