GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002543-TA|BGIBMGA002543-PA|IPR000299|Band 4.1
         (97 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0788 + 6599962-6602700                                           28   1.4  
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    25   7.2  
08_02_1246 - 25559601-25560026,25560031-25560576                       25   9.5  
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    25   9.5  
03_03_0098 + 14392509-14392748,14393116-14393196,14393517-143937...    25   9.5  

>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 16  IQQTTTGKQLFDQVVKTIGLREVWFFGLQYTD 47
           ++     K L +Q+ K + LR VW   + YTD
Sbjct: 685 LETMQASKDLAEQLSKLLKLRRVWIDNISYTD 716


>08_02_0499 -
           17820615-17822516,17823224-17823373,17823491-17823568,
           17823948-17824061,17824145-17824297,17826928-17827071,
           17827162-17827516,17828574-17828741,17829522-17829751,
           17829916-17830049,17830686-17830749
          Length = 1163

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 37  EVWFFGLQYTDSKGDLTW-IKLYKK 60
           E W   L + + KGD  W +KLY++
Sbjct: 300 ENWHRYLDFVEKKGDFDWAVKLYER 324


>08_02_1246 - 25559601-25560026,25560031-25560576
          Length = 323

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 8  MDAELEFAIQQTTTGKQLFDQVVKTIGLREVWF 40
          +DAE    +  T TG +  D V+ ++  RE W+
Sbjct: 7  LDAESNVVVAPTATGDEGADIVLASLPTREGWW 39


>05_07_0181 -
           28225396-28225587,28226009-28226068,28226150-28226416,
           28227167-28227232,28228164-28228963,28229565-28229673,
           28230391-28232097
          Length = 1066

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 47  DSKGDLTWIKLYKKVGKKGMQTIR 70
           DS GD   I  Y+KVG++G   +R
Sbjct: 446 DSNGDNASITKYQKVGEQGSIAVR 469


>03_03_0098 +
           14392509-14392748,14393116-14393196,14393517-14393767,
           14393887-14394239,14394547-14394848
          Length = 408

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 6   TTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVGKKG 65
           T   +  +  I+     K+L +  VK+  L  V   G  Y  +KG+   + L KK+    
Sbjct: 155 TAFGSSYKLGIEAFHAQKELQEIAVKS--LLNVQIPGFSYLPTKGNWRKLTLEKKLRGTL 212

Query: 66  MQTIRVRFS 74
           MQ I+ R S
Sbjct: 213 MQIIQSRLS 221


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,083
Number of Sequences: 37544
Number of extensions: 77108
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 5
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)