Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002542-TA|BGIBMGA002542-PA|IPR002452|Alpha tubulin,
IPR000217|Tubulin, IPR003008|Tubulin/FtsZ, GTPase,
IPR008280|Tubulin/FtsZ, C-terminal
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 739 0.0
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 739 0.0
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 345 8e-96
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 243 3e-65
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 2.3
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 5.3
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 9.3
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 739 bits (1827), Expect = 0.0
Identities = 333/453 (73%), Positives = 388/453 (85%), Gaps = 6/453 (1%)
Query: 1 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSET 55
RE ISVH+GQAGVQIGNACWELYCLEHGI PDG P++ K +D F TFFSET
Sbjct: 2 REVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 56 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 115
G GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 116 VVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQ 175
VL+RIR++AD C+GLQGFLVFH LL+ERL+++YGKKS L+FS+YPAPQ
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 176 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVS 235
VST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VS
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVS 240
Query: 236 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACF 295
SITASLRF G+LNVDL EFQTNLVPYPRIHFPL TY+P++SA KA+HE +V EITN CF
Sbjct: 241 SITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCF 300
Query: 296 EPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 355
EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI
Sbjct: 301 EPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGIC 360
Query: 356 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG 415
Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEG
Sbjct: 361 YEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEG 420
Query: 416 EFSEAREDLAALEKDYEEVGVDSTEGELDEENE 448
EFSEAREDLAALE+DYEEVG DS + E+ E +E
Sbjct: 421 EFSEAREDLAALERDYEEVGQDSMDNEMYEADE 453
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 739 bits (1827), Expect = 0.0
Identities = 332/449 (73%), Positives = 384/449 (85%), Gaps = 1/449 (0%)
Query: 1 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 60
RE IS+H+GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK+
Sbjct: 2 REIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKY 61
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 120
VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+
Sbjct: 62 VPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDK 121
Query: 121 IRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 180
IR++AD C+GLQGFLVFH LL+ERL+++Y KKSKL+FS+YPAPQVST+V
Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSV 181
Query: 181 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 240
VEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITAS
Sbjct: 182 VEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITAS 241
Query: 241 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQ 300
LRF+G+LNVDL EFQTNLVPYPRIHFPL TYAP++SA KA+HE +V EITN CFEP NQ
Sbjct: 242 LRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQ 301
Query: 301 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 360
MVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP
Sbjct: 302 MVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQ 361
Query: 361 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 420
+ G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 HIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEA 421
Query: 421 REDLAALEKDYEEVGVDSTEGELDEENEY 449
REDLAALE+DYEEVG DS E + EE EY
Sbjct: 422 REDLAALERDYEEVGQDSMEVDYMEE-EY 449
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 345 bits (848), Expect = 8e-96
Identities = 171/453 (37%), Positives = 259/453 (57%), Gaps = 15/453 (3%)
Query: 1 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 60
RE + + GQ G Q+G A W EHG+ G T + N +F+E GK+
Sbjct: 2 REIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGKY 59
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 120
VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 60 VPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDV 119
Query: 121 IRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 180
+R+ A+ C LQGF + H LL+ ++ +Y + FS+ PAP+ S V
Sbjct: 120 VRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTV 179
Query: 181 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 240
VEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S
Sbjct: 180 VEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTS 239
Query: 241 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQ 300
RF G LN DL + N+VP+PR+HF + +AP+ + + + ++V E+T F+ N
Sbjct: 240 FRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNM 299
Query: 301 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 360
MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 300 MVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK 359
Query: 361 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 420
DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 -----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 421 R---EDLAALEKDYEEVGVD--STEGELDEENE 448
DL + + Y+E G+D + E++EE E
Sbjct: 412 ESNMNDLVSEYQQYQEAGIDEGDEDYEIEEEKE 444
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 243 bits (595), Expect = 3e-65
Identities = 141/442 (31%), Positives = 234/442 (52%), Gaps = 18/442 (4%)
Query: 1 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 60
RE I++ GQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDVVL 118
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 119 DRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQ-VS 177
D I + AD L+GF + H L+ERL+ Y KK +S++P Q VS
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179
Query: 178 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 237
VV+PYNS+L ++D ++DN A+ I L + PT+ N+L+ ++S+
Sbjct: 180 DVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSAS 239
Query: 238 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS---AEKAYHEQLTVAEITNAC 294
T +LR+ G +N DL +L+P PR HF L +Y P + E + TV ++
Sbjct: 240 TTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRL 299
Query: 295 FEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 353
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V
Sbjct: 300 LLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVA 359
Query: 354 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 413
++ + P + ++ + ML+N T+IA + R ++D + + AF+ Y E +
Sbjct: 360 LSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIF 414
Query: 414 E---GEFSEAREDLAALEKDYE 432
E EF +R+ +A L +YE
Sbjct: 415 EDDLNEFDSSRDVVADLINEYE 436
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 290 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 331
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 413 EEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 448
E GEF +A ED E++Y E + G +DEE +
Sbjct: 31 EMGEFEDAYEDEIESEEEYIEADGEKDNG-MDEEEQ 65
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 9.3
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 180 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 239
V E +I + L SD +NE YDI +N + E N I + + +
Sbjct: 47 VEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAAS 106
Query: 240 SLRFDGALNVDLTE-FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 298
+ + L++ E F+ +V AT A + A+ H + + E+ E A
Sbjct: 107 KILIE-TLDLHQKEGFEETIVTEE------ATDAVDLEAKGTTHGENDLDEVPTELNELA 159
Query: 299 NQMVKCD 305
N++V D
Sbjct: 160 NEVVDVD 166
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,199
Number of Sequences: 5004
Number of extensions: 83644
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 8
length of query: 449
length of database: 2,362,478
effective HSP length: 75
effective length of query: 374
effective length of database: 1,987,178
effective search space: 743204572
effective search space used: 743204572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -