GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002541-TA|BGIBMGA002541-PA|IPR001087|Lipolytic enzyme,
G-D-S-L, IPR008265|Lipolytic enzyme, G-D-S-L, active site,
IPR013830|Esterase, SGNH hydrolase-type
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    30   0.62 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   5.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   7.7  

>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 44  SVHKLRPGDIDVVAAIGDSLVAGSGALEEFALGAFVEYRGVSWCMGGDATWREFLTLPNI 103
           S+ K   G  D VA + D    G G      +GA V         G +A WRE++TL   
Sbjct: 49  SIEKGTVGGTDFVAVVED---VGEGVDRSKYIGATVSGWAPGPLDGSNAAWREYITLDVN 105

Query: 104 LKEFNP 109
           L  F P
Sbjct: 106 LVYFVP 111


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 112 KGYSTGTGEWITKNSKLNVAFPVASDEDALKQAK---IIVARMRASPDIDIAQD 162
           KG   G G +   +   N++ P+A +E    +A+   II+A    S D+ I  D
Sbjct: 138 KGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENTSGDLTIRSD 191


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 235 HSLFCSCFHRGGDELQDIVRMSRLYQK 261
           HSLF S F +  +EL +    S+LYQK
Sbjct: 814 HSLFSSQFRQLFEELSNKETQSKLYQK 840


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,282
Number of Sequences: 5004
Number of extensions: 67687
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 3
length of query: 381
length of database: 2,362,478
effective HSP length: 74
effective length of query: 307
effective length of database: 1,992,182
effective search space: 611599874
effective search space used: 611599874
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)