GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002541-TA|BGIBMGA002541-PA|IPR001087|Lipolytic enzyme,
G-D-S-L, IPR008265|Lipolytic enzyme, G-D-S-L, active site,
IPR013830|Esterase, SGNH hydrolase-type
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660     33   0.50 
07_03_0394 - 17633753-17636788                                         29   8.2  

>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
          Length = 1369

 Score = 32.7 bits (71), Expect = 0.50
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 16  RRQRAIPPSTPFPCEDALSWGRSKE---RPTSVHKLRPGDIDV 55
           RR+R+ PP  P PC +A     ++E   RP S    RP ++D+
Sbjct: 71  RRRRSTPPPRPRPCREARELNSTQEMGGRPVSPSAPRPKELDL 113


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 335 VGNKSDNVPPVLMRSFRCPSRQAPFIFTARNTRTYLLTGQQEG 377
           VGNK++  PP +MR +    +Q P  F  + T   L  G+  G
Sbjct: 214 VGNKAEGPPPPVMRMYAQGPQQQPVEFQLKETSPTLGGGRVIG 256


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,628
Number of Sequences: 37544
Number of extensions: 503516
Number of successful extensions: 886
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 2
length of query: 381
length of database: 14,793,348
effective HSP length: 83
effective length of query: 298
effective length of database: 11,677,196
effective search space: 3479804408
effective search space used: 3479804408
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)