GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002541-TA|BGIBMGA002541-PA|IPR001087|Lipolytic enzyme,
G-D-S-L, IPR008265|Lipolytic enzyme, G-D-S-L, active site,
IPR013830|Esterase, SGNH hydrolase-type
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43211| Best HMM Match : NHase_beta (HMM E-Value=2.3)                82   8e-16
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          31   1.6  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_43211| Best HMM Match : NHase_beta (HMM E-Value=2.3)
          Length = 306

 Score = 81.8 bits (193), Expect = 8e-16
 Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 22/224 (9%)

Query: 156 DIDIAQDWKMITMFIGANDICSAACINPVSWSPAAHARKLANALDYLQEKLPRTIXXXXX 215
           +I+   DWK++T+ IG+ D+C   C++   + P+A  + L  +L+ L+ K          
Sbjct: 48  NINFKDDWKVVTLHIGSFDLCYV-CLDKERYGPSAMIKHLMRSLNLLKSK---------- 96

Query: 216 XXXXXXXXXXXXXMMCRLMHSLFCSCFHRGGDELQDIVRMSRL-YQKHEALLVDSGRYDA 274
                        ++C  +    C C   G    + +V  +   Y+K    L++SG YD 
Sbjct: 97  NVHLEHRGYSPVTILCSNLARNACPCMADGDVASKHVVASAAATYKKLVLELINSGIYDV 156

Query: 275 REDFTVVVQPFMRLFNAPFPPKQPLPLVIHQSYITHDCFHFSQKGHXXXXXXXXXXXXEP 334
            + F VV+QPFM  F  P   +  L       +   DC H +  GH            EP
Sbjct: 157 SDKFAVVIQPFM--FRGPRNKEGGLV----AEFFGPDCIHLNTLGHASAATALWNNMLEP 210

Query: 335 VGNKSDNVPPVLMRSFRCPSRQAPFIFTARNTR--TYLLTGQQE 376
           VGNKSD    +   S +CP++  P+  T  N+   T +LT  +E
Sbjct: 211 VGNKSD--VWLTKVSLKCPTQARPYFATKTNSHVVTGMLTDDEE 252



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 143 QAKIIVARMRASPDIDI--AQDWKMITMFIGANDIC 176
           Q K +++ M +   ++I    DWK++T+ IG+ D+C
Sbjct: 6   QVKKLISEMTSGNGLNINFKDDWKVVTLHIGSFDLC 41


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 138 EDALKQAKIIVARMRASPDIDIAQDWKMITMFIGAND 174
           E   K+  +I+ R+ ASPD+ +  D + IT+F G  D
Sbjct: 86  ETGFKKVALIIVRISASPDLALFSDIQEITIFSGNID 122


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 4   WRVRYPVRRSHVRRQRAIPPSTPFPCEDAL 33
           W V   V+R+  R +RAI P+TP P E ++
Sbjct: 765 WHVTSGVQRARHRGRRAILPATPTPTETSM 794


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,352
Number of Sequences: 59808
Number of extensions: 499631
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 5
length of query: 381
length of database: 16,821,457
effective HSP length: 83
effective length of query: 298
effective length of database: 11,857,393
effective search space: 3533503114
effective search space used: 3533503114
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)