GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002540-TA|BGIBMGA002540-PA|IPR002937|Amine oxidase,
IPR001220|Legume lectin, beta domain
         (305 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   2.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 150 PFVTVGIVNLYFATQKPLI 168
           P VT GI+ + FAT   LI
Sbjct: 163 PIVTTGIIKIQFATCAHLI 181



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 179 IENSPILGVVFDSC 192
           +EN PIL ++F  C
Sbjct: 149 VENEPILYLIFSYC 162


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 10   AKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTGNELVLSDLARKAQEEKWSVYTIK 69
            A+E   K   K+L  + Q+ GG       S+  S  G    +    +KA +EK S+  I 
Sbjct: 1080 AEEAKRKAKQKSLLGFLQS-GGTSDDDEGSIEISLAGLFKCMLCTHQKAGDEKASLINIA 1138

Query: 70   GGLEMFPNKLQAHLK 84
              LEM  NK   H++
Sbjct: 1139 DSLEML-NKRLDHIE 1152


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 10   AKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTGNELVLSDLARKAQEEKWSVYTIK 69
            A+E   K   K+L  + Q+ GG       S+  S  G    +    +KA +EK S+  I 
Sbjct: 1080 AEEAKRKAKQKSLLGFLQS-GGTSDDDEGSIEISLAGLFKCMLCTHQKAGDEKASLINIA 1138

Query: 70   GGLEMFPNKLQAHLK 84
              LEM  NK   H++
Sbjct: 1139 DSLEML-NKRLDHIE 1152


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 10   AKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTGNELVLSDLARKAQEEKWSVYTIK 69
            A+E   K   K+L  + Q+ GG       S+  S  G    +    +KA +EK S+  I 
Sbjct: 1080 AEEAKRKAKQKSLLGFLQS-GGTSDDDEGSIEISLAGLFKCMLCTHQKAGDEKASLINIA 1138

Query: 70   GGLEMFPNKLQAHLK 84
              LEM  NK   H++
Sbjct: 1139 DSLEML-NKRLDHIE 1152


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 10   AKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTGNELVLSDLARKAQEEKWSVYTIK 69
            A+E   K   K+L  + Q+ GG       S+  S  G    +    +KA +EK S+  I 
Sbjct: 1080 AEEAKRKAKQKSLLGFLQS-GGTSDDDEGSIEISLAGLFKCMLCTHQKAGDEKASLINIA 1138

Query: 70   GGLEMFPNKLQAHLK 84
              LEM  NK   H++
Sbjct: 1139 DSLEML-NKRLDHIE 1152


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,595
Number of Sequences: 317
Number of extensions: 3083
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 305
length of database: 114,650
effective HSP length: 57
effective length of query: 248
effective length of database: 96,581
effective search space: 23952088
effective search space used: 23952088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)