Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002540-TA|BGIBMGA002540-PA|IPR002937|Amine oxidase,
IPR001220|Legume lectin, beta domain
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910... 46 3e-05
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 29 3.5
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 29 3.5
02_05_1247 + 35233756-35233785,35234902-35236107 29 4.7
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 6.2
01_06_0024 + 25690428-25690637,25694488-25694549,25694667-256947... 29 6.2
>01_02_0022 +
10290033-10290407,10290497-10290848,10290923-10291070,
10291145-10291225,10291651-10291822,10292120-10292158,
10292384-10292543,10292676-10292779,10292979-10293278
Length = 576
Score = 46.4 bits (105), Expect = 3e-05
Identities = 71/333 (21%), Positives = 136/333 (40%), Gaps = 39/333 (11%)
Query: 4 GICAGDAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTGNELVLSDLARKAQEEKW 63
G+ AGD ++S+K ++ E T G ++ G +K++ + N D R +
Sbjct: 243 GVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGGTIKTI-QERGKNPKPPRD-PRLPTPKGQ 300
Query: 64 SVYTIKGGLEMFPNKLQAHLKDNNVTMNLSTKVEAIEFVDSGSVSLNIQTGE---KLSVN 120
+V + + GL M P+ + + L + LS K+ +I D+ +L +T E +
Sbjct: 301 TVASFRKGLTMLPDAITSRLGSK---VKLSWKLTSITKSDNKGYALVYETPEGVVSVQAK 357
Query: 121 HVYSSIPAYCLASLVQKQH-------------PELAKTLKDIPFVTVGIVNLYF---ATQ 164
V +IP+Y + +++ + A L + V V + + A +
Sbjct: 358 TVVMTIPSYVASDILRPLSISVVIEFGLVIYLSDAADALSIFYYPPVAAVTVSYPKEAIR 417
Query: 165 KPLI----KPAFGFLVPPIENSPILGVVFDSCCMPDQN--GTVLTVMLGGRWFEEKFGKN 218
K + FG L P + LG ++ S P++ G VL + G
Sbjct: 418 KECLIDGELQGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIVSK 477
Query: 219 TTSENLYNIAVKEVGSILDIKDK---PTAFNVNILNRCIPQYVVGHYERVDEIRQYIKSN 275
T SE L +++ +L I K P V + + IPQ+++GH + ++ + +
Sbjct: 478 TESE-LVEAVDRDLRKML-INPKAVDPLVLGVRVWPQAIPQFLIGHLDHLEAAKSALGKG 535
Query: 276 NLPISLIGSSY-DGVGINDVI---YSAKSQVEE 304
+G +Y GV + + Y + SQ+ +
Sbjct: 536 GYDGLFLGGNYVAGVALGRCVEGAYESASQISD 568
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 126 IPAYCLASLVQKQHPELAKTLKDIPFVTVGIVNLYFATQKPLI-KPAFGFLVPPIENSPI 184
+P C L PE A+ L++ ++VG + A ++P+I P+ P +N
Sbjct: 66 LPTQCEGLLRGASEPESAQALQEPDVLSVGELLGAIALKEPIISSPSSSPQAVPEDN--- 122
Query: 185 LGVVFDSCCMPDQNGTVLTV 204
+ V CC+ G+V+ V
Sbjct: 123 IDAVPSGCCLSSSPGSVIWV 142
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 29.5 bits (63), Expect = 3.5
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 28 THGGVVKGLMKSLFSSKTGNELVLSDLARKAQEEKWSVYTIKGGLEMFPNKLQAHLKDNN 87
T G +KG + ++ ++L + AQ+ S++ I GL+ P N+
Sbjct: 751 TQGATLKGTSVQIEPFDLPGTVITNNLTQSAQKSSDSLFNIVPGLDGNP---------NS 801
Query: 88 VTMNLSTKVEAIEFVD-SGSVSLNIQTGEKL---SVNHVYSSIPAYCLASLVQKQHP 140
V++ L TK + SV IQ K S+N ++ ++ A+ +++ HP
Sbjct: 802 VSLELGTKPGCFLVIGVDYSVGTKIQVSCKSSLPSINGIFEQAASFVQAAPLRQYHP 858
>02_05_1247 + 35233756-35233785,35234902-35236107
Length = 411
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 224 LYNIAVKEVG--SILDIKDKPTAFNVNILNRCI---PQYVVGHY 262
LY+ K+VG S L+ TAF+ N++ C+ P Y+VGHY
Sbjct: 3 LYSTDSKKVGFLSFLNFFHNSTAFS-NLIGCCLFILPSYLVGHY 45
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 49 LVLSDLARKAQEEKWSVYT----IKGGLEMFPNKLQAHLKDNNVTMNLSTKVE 97
L++ +L+R A EEKW +Y+ + G + + + H+K ++ M ++ ++E
Sbjct: 278 LLVIELSRYADEEKWRLYSSELRMPHGTHLRKYRSEEHVKLASIAMEIAKEME 330
>01_06_0024 +
25690428-25690637,25694488-25694549,25694667-25694715,
25697066-25697182,25697305-25697358,25697813-25697898,
25698058-25698163,25698354-25698488
Length = 272
Score = 28.7 bits (61), Expect = 6.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 106 SVSLNIQTGEKLSVNHVYSSIPAYC 130
SV++ ++ GE +V ++ + +PAYC
Sbjct: 121 SVTMGLEPGEAFTVRNIANMVPAYC 145
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,652,684
Number of Sequences: 37544
Number of extensions: 350533
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 6
length of query: 305
length of database: 14,793,348
effective HSP length: 82
effective length of query: 223
effective length of database: 11,714,740
effective search space: 2612387020
effective search space used: 2612387020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -