GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002540-TA|BGIBMGA002540-PA|IPR002937|Amine oxidase,
IPR001220|Legume lectin, beta domain
         (305 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.87 
AF533893-1|AAM97678.1|  570|Anopheles gambiae ascorbate transpor...    25   2.0  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 0.87
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 51  LSDLARKAQEEKWSVYTIKGGLEMFPNKLQAHLKDNNVTMNLSTKVEAIE 100
           L+D  R+  +E    +T +  LE+  NKL+ +L  NN+       V+A++
Sbjct: 800 LNDEIRRLNQENKEAFTSRMSLEVTKNKLE-NLLTNNLFRRKDELVQALQ 848


>AF533893-1|AAM97678.1|  570|Anopheles gambiae ascorbate transporter
           protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 202 LTVMLGGRWFEEKFGKNTTSENLYNIAVKEVGS 234
           L  ML G W     G NT  EN+  I V +VGS
Sbjct: 353 LGTMLAGLWGSGN-GTNTFGENVGAIGVTKVGS 384


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,045
Number of Sequences: 2123
Number of extensions: 12691
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 305
length of database: 516,269
effective HSP length: 64
effective length of query: 241
effective length of database: 380,397
effective search space: 91675677
effective search space used: 91675677
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)