GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002540-TA|BGIBMGA002540-PA|IPR002937|Amine oxidase,
IPR001220|Legume lectin, beta domain
         (305 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 148  DIPFVTVGIVNLYFATQKPLIKPAFGFLVPPIEN-SPILGVVFDSCCMPDQNGTVLTVML 206
            D+ +   G+       ++P ++   G++ PP     P+ G  +++C    +   + ++  
Sbjct: 1619 DVVYQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRS 1678

Query: 207  GGRW 210
               W
Sbjct: 1679 HSTW 1682


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 41  FSSKTGNELVLSDLARKAQEEKWSVYTIKGGLEMFPNKLQAHLKDNNVTMNLSTK 95
           F+ +T    V+  L    QE + S    KG +    +KLQ H KD+++ + L  K
Sbjct: 229 FNFRTDTAGVIKKLTEDTQERRLSN---KGSI----SKLQFHNKDDDLILTLGKK 276


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 173 GFLVPPIENSPILGVVFDSCCMPDQ 197
           G + PP+  +P  G+++    +P+Q
Sbjct: 842 GVIYPPVIGTPSTGMMYKPFLIPEQ 866


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 109 LNIQTGEKLSVNHVYSSIPAY 129
           LN +  E  ++NH +SS+  Y
Sbjct: 79  LNAKVSEIAALNHKFSSVTLY 99


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 219 TTSENLYNIAVKEVGSILDIKDKPTAFNVNILNRCIPQYV---VGHYERVDEIRQYIKSN 275
           T  + L  I V E G+   I D+    NVN+ +  +  YV   +  +  VDE   + + N
Sbjct: 24  TGIQTLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKN 83

Query: 276 NLPI 279
              I
Sbjct: 84  TRDI 87


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,966
Number of Sequences: 429
Number of extensions: 3784
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 305
length of database: 140,377
effective HSP length: 57
effective length of query: 248
effective length of database: 115,924
effective search space: 28749152
effective search space used: 28749152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)