GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002539-TA|BGIBMGA002539-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...   484   e-137
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   5.8  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   5.8  
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    27   7.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   7.7  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score =  484 bits (1193), Expect = e-137
 Identities = 263/628 (41%), Positives = 348/628 (55%), Gaps = 39/628 (6%)

Query: 1   MLWRACRGNVFLRQAEIDTPLEDPSSSDQVYKSVFIIFFQGDQLKTRVKKICEGFRATLY 60
           +LWR  RGN+F+ Q   D  L   +  ++  K++F++   G Q+  R++KI E   ATL+
Sbjct: 191 ILWRTLRGNLFIHQVRADDSLIHGAEKNEE-KTIFLVIAHGTQILLRIRKISESLGATLF 249

Query: 61  PCPESPADRREMAMGVMTRIEDLNTVLGQTQDHRHRVLVAAAKNIKNWFVKVRKIKAIYH 120
           P  E    R          I DLN VL  T+   +  L   A++I  W   + K K ++ 
Sbjct: 250 PVEEDAPGRTSQIQQANVSISDLNAVLENTRSALYTELTFIAEHISAWEAVLHKDKTVFQ 309

Query: 121 TLNLFNLDVTQKCLIAECWVPALDMETIQLALRRGTERSGSSVPPILNRMETIEDPPTYN 180
            +NLFN D   KCLIAE W P  ++  +Q  LR  ++ + S  P ILN + T E PPTY 
Sbjct: 310 VMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTILNVVHTSEQPPTYF 369

Query: 181 RTNKFTSAFQHLIYAYGVATYREVNPAPYTVITFPFLFAVMFGDLGHGAIMAAFGFWMCY 240
           R NKFT  FQ +I +YG+ATYREVN     ++TFPFLFA+MFGDLGHGAIMA+       
Sbjct: 370 RVNKFTEGFQSIIDSYGIATYREVNHGIVAIVTFPFLFAIMFGDLGHGAIMASVALMFVL 429

Query: 241 KEKPLQAKKIDSEIWNIFFGGRYIILLMGLFSMYTGLIYNDIFSKSLNIFGSSWRNNYDG 300
            EK L AKK   EI  + F GRYI+LLMGLFSMY G +YND+FSK ++IF S W      
Sbjct: 430 YEKTLGAKKDLDEIVGMVFYGRYIVLLMGLFSMYVGFVYNDLFSKPMSIFSSRWVWPVKS 489

Query: 301 STXXXXXXXXXXPDSKDYLQYPYPFGIDPVWQLAEANKIIFMNGYKMKISIIIGVFHMLF 360
                                 YP GIDP W  A+ N ++FMN YKMK+SII+GV HM F
Sbjct: 490 EEAIARAVQVGT----------YPIGIDPTWHSAD-NNLLFMNSYKMKLSIILGVIHMTF 538

Query: 361 GVCLSLWNHLYFKRRISIYVEFIPQILFLSLLFFYMVLLMFIKWTTYGATPGHFGSQDP- 419
            + LSL N+ +FKR++ IY  F+P ++FL  +F Y+V+ +  KW            Q P 
Sbjct: 539 CLFLSLSNYRFFKRKLDIYAVFVPSLIFLEAIFGYLVITIVYKWCIDWKAK---DLQPPS 595

Query: 420 VNNIVCALF--------QLF----------VIVALLCVPIMLFGKPYFIMREQKQRARQG 461
           + N++  +F        QL+          VI AL+CVP +L  KP+ + R       + 
Sbjct: 596 LLNMLILMFLSPGTLEDQLYPGQKYLQVGLVIAALICVPWLLIVKPFVLWRRHSNEENK- 654

Query: 462 HQPVXXXXXXXXXXXXPVPASGHHDE----EITEVFIHQAIHTIEFVLGSVSHTASYLRL 517
           +Q +             +       +    E+ EV IHQ IHTIEF LG VSHTASYLRL
Sbjct: 655 YQSLNSDLPNVDEADALMAVDSQEKQAEPFELGEVVIHQVIHTIEFCLGCVSHTASYLRL 714

Query: 518 WALSLAHAQLAEVAWNMLLRKGLMSNDYQGGIFLYVVFAGWAAISVSILVLMEGLSAFLH 577
           WALSLAH QL+ V WNM L  G       G IF+ ++F  W   +  +LV MEG SA LH
Sbjct: 715 WALSLAHNQLSSVLWNMTLANGFRMTGIVGSIFVVILFGFWFIATCVVLVAMEGTSAMLH 774

Query: 578 TLRLHWVEFQSKFYGGEGYLFQPFSFEI 605
           +LRLHWVE  SK + GEGY F PF+F++
Sbjct: 775 SLRLHWVEGMSKHFEGEGYAFTPFTFKV 802


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 532 WNMLLRKGLMSNDYQGGIFL 551
           WN+++ K ++SND Q  IFL
Sbjct: 360 WNVIIDKIIVSNDQQSSIFL 379


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 341 FMNGYKMKISIIIGVFHMLFGVCLSLWNHLYFKRRISIYVEFIPQILFL-SLLFFYMVLL 399
           +++ Y + IS++ G+  M+F    S    LY K  ISIY  FI  +LFL ++     V  
Sbjct: 152 WLSVYAVLISVLHGILFMIFSA-QSYKPLLYDK--ISIYGYFITVVLFLMTVASLPSVRR 208

Query: 400 MFIKW 404
            F +W
Sbjct: 209 KFFEW 213


>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 176 PPTYNRTNKFTSAFQHLIYAYGVATYREVNPAPYTV 211
           PPT  R + FT   + L+YA+G     +VNPAP ++
Sbjct: 10  PPT-RRQHLFTKDLKSLMYAFG----DDVNPAPDSI 40


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/43 (23%), Positives = 25/43 (58%)

Query: 7   RGNVFLRQAEIDTPLEDPSSSDQVYKSVFIIFFQGDQLKTRVK 49
           R N   R+ ++++PL + +   +++ +V+ I F GD  +  ++
Sbjct: 795 RYNNQTRKVKVESPLSNANELGELFSNVYKISFSGDSYELNIE 837


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,257
Number of Sequences: 5004
Number of extensions: 113583
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 7
length of query: 615
length of database: 2,362,478
effective HSP length: 77
effective length of query: 538
effective length of database: 1,977,170
effective search space: 1063717460
effective search space used: 1063717460
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)