Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002538-TA|BGIBMGA002538-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit, IPR009053|Prefoldin
(166 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 87 2e-18
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 33 0.029
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.12
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 30 0.20
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 28 0.82
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.1
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 27 1.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.4
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 1.9
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.5
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 2.5
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 4.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 4.4
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 4.4
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 4.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 5.8
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces... 25 5.8
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 7.6
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 7.6
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 7.6
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 7.6
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 86.6 bits (205), Expect = 2e-18
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 26 VSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI--PMLEIP 83
+S LGEL + F+DLNPDV AFQR FV E+RR + ER LRYL EI +GI P +P
Sbjct: 1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLP 60
Query: 84 GECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDE 142
+ + D+ +LE +R++ ++++ L+ YL+ E ++L K FF +
Sbjct: 61 PSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSK 119
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 32.7 bits (71), Expect = 0.029
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 48 QRKFVNE-VRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDL-EATFEKL 105
+RK VN+ V+ E+ R L+ KE+ + I M EIP + Q ++ D+ A +L
Sbjct: 142 KRKLVNDAVKHFIELNR-LKTYRKELYDEVISMNEIPSQASTTHQKLQVCDICSAYLSRL 200
Query: 106 ENELREVNQNAEALKRNYLELTELKHILR 134
+N+ R + + + Y L + LR
Sbjct: 201 DNDRRLADHFSGKMHLGYAMLRNIARDLR 229
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.12
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 55 VRRCDEMERKLRYLE--KEIRRDGIPML------EIPGECPEAPQP-REMIDLEATFEKL 105
++RC E+E K+ LE + I ++ I L E + PE +P + I + + K
Sbjct: 157 IQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKK 216
Query: 106 ENELREVNQNAEALKRNYLELTE 128
+ + NQ ++ K+N TE
Sbjct: 217 KKKRNRKNQKKKSTKQNIEATTE 239
Score = 29.1 bits (62), Expect = 0.35
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 91 QPREMIDLEATFEKLENEL-REVNQNAEALKRNYLELTELKHILR-KTQVFFDERLYCDA 148
Q +E ++ + ++ NE R++ + E L+ ELTEL+ +LR +TQ RL +
Sbjct: 482 QMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVE- 540
Query: 149 DVGVYRSPLRQALES 163
+ + R L+QA E+
Sbjct: 541 QLELERQDLKQAGEN 555
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 29.9 bits (64), Expect = 0.20
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 45 NAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEK 104
+A K + +R+C++ R ++E+ R + + E + + EM+ L + +
Sbjct: 8 DAVYNKVADILRQCEDFHRLSTHIERFEREQASLNMHVKTELEKHVEAVEMLTLCESARE 67
Query: 105 LENELREVNQNAEALKRNYLE---LTELKHILRKTQVFFD---ERLYCDADV 150
+ +E +++ + K Y +++L +++++T V D E L D+D+
Sbjct: 68 MVDEFPLISRMSRIYKNCYATKQMISQLNNLVKETDVIEDMLREDLELDSDM 119
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 27.9 bits (59), Expect = 0.82
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 91 QPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVF-FDERLYCDAD 149
Q RE+I+ E KLE+E + N E LK++ E +++ + ++F ++RL +A+
Sbjct: 740 QERELIESEKHRMKLESENLHLQANIELLKKD----LEAINVVYEAKIFDLEKRLSSEAN 795
Query: 150 VGVYRSPL 157
+P+
Sbjct: 796 APELHNPV 803
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/106 (19%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 40 LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAP--QPREMID 97
+ ++N+++ NE+ + + KL +L+ G + + + P QP +
Sbjct: 301 IQTELNSWKSLITNELPTPEAVSNKLVFLQNTNANLGERVSSLESQLSNKPANQPLGANE 360
Query: 98 LEAT-FEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDE 142
+A +LE +L+E+++ L+R T+ +LR+ +D+
Sbjct: 361 KDAAHITELETKLKELHEQNRRLQRQKSLATQEIDLLRENLKSYDD 406
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 54 EVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVN 113
+V +++E+ + ++ +LE+ + + Q + +LE+ +EKLE +++E+
Sbjct: 871 QVNELEQLEKDINKSSEDCDLQKKKLLEVSSK--QGSQAPFLNELESEYEKLEADIQEMA 928
Query: 114 QNAEALKRNYLELTELKHILRK 135
Q + + LE E H L +
Sbjct: 929 QKS---RTEILEANEYLHQLNE 947
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.1 bits (57), Expect = 1.4
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 8 EEMTLCQLFLQSEAAYACVSELGELGLVQFR--DLNPDVNAFQRKFVNEVRRCDEMERKL 65
EE L QL + +A + + + E LV R D N ++N +K E + D + K+
Sbjct: 108 EEDELDQLCDEWKARLSELQQYREKFLVGKRKCDCNDEINERLKKLTEEQQNVDMLVAKV 167
Query: 66 RYLEKEIRRDGIPMLEIPGECPEA----PQPREMIDLEATFEKLE 106
+L K + + ++++ + E + ++++D KLE
Sbjct: 168 NFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLLDHNDLLSKLE 212
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 1.4
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 22 AYACVSELGELGLVQFRDLNPDVNAFQRK-------FVNEVRRCDEM----ERKLRYLEK 70
A +S + + + FR+L+ + F+RK F E+R+ D + ++L LE+
Sbjct: 934 ALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEE 993
Query: 71 EIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKL---ENELREVNQNAEALKRN 122
++ G P +P+ + + L++ +KL + V + ALKR+
Sbjct: 994 RVKLLGAGS---TSSIPNSPRASKRVSLDSEDKKLVPASPDKSAVQRGITALKRD 1045
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 90 PQPREMIDLEATFEKLENELREVNQNAEALKRN-YLELTELKHILRKTQV 138
P PR +LEATFE N + +V + R+ ++E+T L T++
Sbjct: 469 PMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKI 518
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 2.5
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 52 VNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKLENELR 110
VN +R + E+K+ ++E R +LE E Q + I+ LEA E+ +E
Sbjct: 127 VNRKQRAAKEEQKI---QEEFERQITDLLE------EQQQLKLEIERLEAETERANSETE 177
Query: 111 EVNQNAEALKRNYLELTE--LKH 131
+ + EAL+ Y EL LKH
Sbjct: 178 QYEKQKEALEEEYEELRNECLKH 200
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 103 EKLENELREVNQNAEALKRNYLELTELKHILRK 135
EKLE+E+ +V+ N E K L ++ + L K
Sbjct: 7 EKLEHEIEQVHDNIENRKEEVSTLQDMANDLEK 39
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 2.5
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 59 DEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEA 118
D +ERKLR L EIR + E EA + R + E++E E R + + E
Sbjct: 417 DNLERKLRQLRVEIR-------ALEREKDEASKER-LKAARKEAEQVEEETRPIREKYEL 468
Query: 119 LKRNYLELTELKHIL 133
K EL + K L
Sbjct: 469 EKSRGSELQDAKRRL 483
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 4.4
Identities = 16/77 (20%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 47 FQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKL 105
FQ K ++ +E K+ YL++ + ++ + ++ +C + +++ + EK
Sbjct: 543 FQVKKSSQKSTIQNLEEKVSYLQQFMDKNNATLTDLEFQCSDLSSSIDILSKQDEEHEKE 602
Query: 106 ENELRE--VNQNAEALK 120
+ +L++ V+ +AE LK
Sbjct: 603 KRKLKDTGVSTSAEELK 619
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 4.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 57 RCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNA 116
R + +R ++ + +E D +LE+P PE +++ E ++EN R NQ+
Sbjct: 161 RMTKRQRAIQGILEEGEED--ELLELP---PETSGRKKLTPEEMALRRIENARRRKNQSE 215
Query: 117 EALKRNYLE 125
L+ +E
Sbjct: 216 RRLEEEKME 224
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 27 SELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPG-- 84
SE L V D N + + KF + E KL ++EI R + ++ +
Sbjct: 911 SENDSLKSVSNDDQNKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNAS 970
Query: 85 ---ECPEAPQPREMIDLEATFEKLENELREVNQ 114
+ + R + DLE+ ++LE +L+E ++
Sbjct: 971 LNMQSLKDSDNRTISDLESKNKELEKKLKEADE 1003
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 23 YACVSELGELGLVQFRDLN 41
YACV+ + LG++ FRD N
Sbjct: 171 YACVAMIAGLGVLGFRDPN 189
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 5.8
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 48 QRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLEN 107
Q K +NE R + +++ +LE+ RR+ IP+ E +A Q E D E +E+ E
Sbjct: 667 QNKSMNE--RLRVIGKRIDHLERAYRREAIPLWE-----EDAKQQAEH-DREIFYER-EK 717
Query: 108 ELREVNQ 114
+ +EV +
Sbjct: 718 QRKEVQE 724
>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 63 RKLRYLEKEI-RRDGIPMLEIPGECP-EAPQPRE 94
RK R +E ++DG+P +E+ ECP E + R+
Sbjct: 109 RKDRDQAREFHKKDGLPFIEVYVECPVEVAEQRD 142
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 7.6
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 97 DLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDERLYCDAD-VGVYRS 155
D A E+ +++ Q E ++R E+TEL H L +V E+ D D + +S
Sbjct: 245 DRIAALERNDDDSGAFIQREERIERIKAEITELNHSLELLRV---EKQQNDEDYTNIMKS 301
Query: 156 PLRQALESAGL 166
+ L+S+ L
Sbjct: 302 KVALELQSSQL 312
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 95 MIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFF 140
++ ++ FE E +L E ++ E L + + +E+ +RK F
Sbjct: 129 LLSMKEKFESSEKKLSEFSEMCENLSTDEMRFSEIADGIRKGLTIF 174
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 85 ECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRK 135
+C A + LEA L+ + EV N + ++ Y+ + K+ILRK
Sbjct: 392 DCLRANKSTMAWGLEARVPFLDKDFLEVALNIDPEEKMYINGRKEKYILRK 442
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 7.6
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 36 QFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREM 95
Q R++ + N +++ + E+ + + L+KE R D IP PG+ E +P +
Sbjct: 59 QVRNMEDEANQYEQ---TDSSSDQEVMNEKQSLDKENRNDNIPHENNPGQ-QEINEP--I 112
Query: 96 IDLEATFEKLENELRE 111
D E+L + E
Sbjct: 113 FDFHMFLEQLRSSSAE 128
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.138 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,906
Number of Sequences: 5004
Number of extensions: 29988
Number of successful extensions: 129
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 27
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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