GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002537-TA|BGIBMGA002537-PA|undefined
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    27   3.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   9.4  

>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 118 GVASGIFVLAGLLCMVLHLYTKARYHP 144
           G   G FVLAGL  + +H Y K ++ P
Sbjct: 333 GCICGAFVLAGLFGISMHNYFKKKFTP 359


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 142  YHPTHLADARLTPPCLYSLNDTG 164
            +H T     RLTPP  Y ++D G
Sbjct: 3525 FHNTEAVPFRLTPPIQYLISDLG 3547


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.137    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,685
Number of Sequences: 5004
Number of extensions: 38978
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 2
length of query: 357
length of database: 2,362,478
effective HSP length: 74
effective length of query: 283
effective length of database: 1,992,182
effective search space: 563787506
effective search space used: 563787506
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)