GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002537-TA|BGIBMGA002537-PA|undefined
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598...    31   1.4  
11_08_0019 + 27697918-27698609,27701107-27701372,27701778-277019...    29   7.5  
01_07_0229 + 42161770-42164562                                         29   7.5  

>09_04_0108 +
           14657020-14657193,14659040-14659355,14659728-14659887,
           14661265-14661725,14663778-14663856,14664732-14664882,
           14665414-14665467,14665724-14665888
          Length = 519

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 78  HNAYCKCEPGYHSTSHSRPTYRVFC 102
           H  +C+C    H+TSHSR   R  C
Sbjct: 452 HVLHCECPKAIHNTSHSRSALRSIC 476


>11_08_0019 +
           27697918-27698609,27701107-27701372,27701778-27701948,
           27702187-27703166,27703723-27703804,27704148-27704170
          Length = 737

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)

Query: 69  AHSSCVQVNHNAY---CKCEPGYHSTSH 93
           +HS CV V +N +   C C  GYH   +
Sbjct: 286 SHSYCVNVTNNGHGYLCNCSDGYHGNPY 313


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 81  YCKCEPGYHSTSHSRPTYRVFCTEDMVLLTADMPTL 116
           Y  CE G+HS SH    Y  F  E++  LT ++  L
Sbjct: 612 YAGCEEGFHSRSHM--DYDEFRIEELSCLTRELKAL 645


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.137    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,600
Number of Sequences: 37544
Number of extensions: 290065
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 3
length of query: 357
length of database: 14,793,348
effective HSP length: 83
effective length of query: 274
effective length of database: 11,677,196
effective search space: 3199551704
effective search space used: 3199551704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)