GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002535-TA|BGIBMGA002535-PA|undefined
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7T7I7 Cluster: Predicted protein; n=2; Nematostella ve...    47   8e-04
UniRef50_Q31IE6 Cluster: DNA polymerase III, delta subunit; n=1;...    35   4.3  
UniRef50_Q7NA36 Cluster: Similar to unknown protein; n=1; Photor...    34   5.7  
UniRef50_A7LTN2 Cluster: Putative uncharacterized protein; n=1; ...    34   5.7  
UniRef50_UPI0000DA22E1 Cluster: PREDICTED: similar to WD repeat ...    34   7.6  
UniRef50_Q6ZQU8 Cluster: CDNA FLJ46878 fis, clone UTERU3014906; ...    34   7.6  

>UniRef50_A7T7I7 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 198

 Score = 47.2 bits (107), Expect = 8e-04
 Identities = 48/186 (25%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 139 TQTPLRQFLHSGLQCVELIRVYPFKHVHVSGATQV---AL--IHMLEQTGLHSPL---TR 190
           TQ   R F H  ++    +    F HVH+ G T V   AL  IHM   T +H+       
Sbjct: 2   TQVHTRGFTHVHMRSFTHVHTRAFTHVHIRGFTHVHTRALTHIHMRGFTHVHTRAFTHVH 61

Query: 191 LNPSLQEHLFGATQIPLRQFLHSGLQCVEFIRVYPFKHAHLSGATQV---ALLHMLEQTG 247
           +      H    T +  R F H  ++    +    F H H+   T V   A  H+  +  
Sbjct: 62  MRAFTHVHTRAFTHVHTRGFTHVHMRAFTHVHTRGFTHVHMRSFTHVHTRAFTHVHIRGF 121

Query: 248 LHSPLTLLKPSLQEQLFGATQKPLRQFLHWGLQCVEFIRVYPFKHAHLSGATQVALLHML 307
            H     L       + G T    R F H  ++    +    F H H  G T V   HM 
Sbjct: 122 THVHTRAL---THIHMRGFTHVHTRAFTHVHMRAFTHVHTRAFTHVHTRGFTHV---HMR 175

Query: 308 EQTGLH 313
             T +H
Sbjct: 176 AFTHVH 181



 Score = 45.6 bits (103), Expect = 0.002
 Identities = 44/168 (26%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 93  IRVYAFKHAHVSGATQV---ALIHVLEQTGLQSSLTLLKPSLQEQLFGATQTPLRQFLHS 149
           +   AF H H+ G T V   AL H+    G     T     +  + F  T    R F H 
Sbjct: 20  VHTRAFTHVHIRGFTHVHTRALTHI-HMRGFTHVHTRAFTHVHMRAF--THVHTRAFTHV 76

Query: 150 GLQCVELIRVYPFKHVHVSGATQVAL-----IHMLEQTGLH-SPLTRLNPSLQEHLF--G 201
             +    + +  F HVH  G T V +     +H    T +H    T ++     H+   G
Sbjct: 77  HTRGFTHVHMRAFTHVHTRGFTHVHMRSFTHVHTRAFTHVHIRGFTHVHTRALTHIHMRG 136

Query: 202 ATQIPLRQFLHSGLQCVEFIRVYPFKHAHLSGATQVALLHMLEQTGLH 249
            T +  R F H  ++    +    F H H  G T V   HM   T +H
Sbjct: 137 FTHVHTRAFTHVHMRAFTHVHTRAFTHVHTRGFTHV---HMRAFTHVH 181



 Score = 45.2 bits (102), Expect = 0.003
 Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 137 GATQTPLRQFLHSGLQCVELIRVYPFKHVHVSGATQVALIHMLEQTGLHS---PLTRLNP 193
           G T    R F H  ++    +    F HVH  G T V   HM   T +H+       +  
Sbjct: 48  GFTHVHTRAFTHVHMRAFTHVHTRAFTHVHTRGFTHV---HMRAFTHVHTRGFTHVHMRS 104

Query: 194 SLQEHLFGATQIPLRQFLHSGLQCVEFIRVYPFKHAHLSGATQVALLHMLEQTGLHSPLT 253
               H    T + +R F H   + +  I +  F H H    T V   HM   T +H+   
Sbjct: 105 FTHVHTRAFTHVHIRGFTHVHTRALTHIHMRGFTHVHTRAFTHV---HMRAFTHVHT--- 158

Query: 254 LLKPSLQEQLFGATQKPLRQFLHWGLQCVEFIRVYPFKHAH 294
             +        G T   +R F H  ++    +    F H H
Sbjct: 159 --RAFTHVHTRGFTHVHMRAFTHVHMRAFTHVHTRAFTHVH 197



 Score = 37.1 bits (82), Expect = 0.81
 Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 196 QEHLFGATQIPLRQFLHSGLQCVEFIRVYPFKHAHLSGATQVALLHMLEQTGLHSPLTLL 255
           Q H  G T + +R F H   +    + +  F H H    T +   HM   T +H+     
Sbjct: 3   QVHTRGFTHVHMRSFTHVHTRAFTHVHIRGFTHVHTRALTHI---HMRGFTHVHT----- 54

Query: 256 KPSLQEQLFGATQKPLRQFLHWGLQCVEFIRVYPFKHAHLSGATQVALLHMLEQTGLHSS 315
           +      +   T    R F H   +    + +  F H H  G T V   HM   T +H+ 
Sbjct: 55  RAFTHVHMRAFTHVHTRAFTHVHTRGFTHVHMRAFTHVHTRGFTHV---HMRSFTHVHT- 110

Query: 316 LTRPKPTLQEHLFGATQTPLRQFLH 340
               +     H+ G T    R   H
Sbjct: 111 ----RAFTHVHIRGFTHVHTRALTH 131


>UniRef50_Q31IE6 Cluster: DNA polymerase III, delta subunit; n=1;
           Thiomicrospira crunogena XCL-2|Rep: DNA polymerase III,
           delta subunit - Thiomicrospira crunogena (strain XCL-2)
          Length = 338

 Score = 34.7 bits (76), Expect = 4.3
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 222 RVYPFKHAHLSGATQVAL--LHMLEQTGLHSPLTLLKPSLQ-EQLFGATQKPLRQFLHWG 278
           +++    A L G TQ AL  LH L+Q GL +P+ L   S +  QL    QK  +Q L   
Sbjct: 218 QLFALSTAMLFGRTQYALQILHRLQQEGLEAPIVLWLLSKELRQLISIAQK--QQMLSLP 275

Query: 279 LQCVEFIRVYPFKHAHLSGATQ 300
            Q  + +R++  K A  S A Q
Sbjct: 276 -QVYKQLRIWSSKQAEFSAALQ 296


>UniRef50_Q7NA36 Cluster: Similar to unknown protein; n=1;
           Photorhabdus luminescens subsp. laumondii|Rep: Similar
           to unknown protein - Photorhabdus luminescens subsp.
           laumondii
          Length = 398

 Score = 34.3 bits (75), Expect = 5.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 319 PKPTLQEHLFGATQTPLRQFLHSGIILADRSDTWTVAGLWEALAGM--LWIYGTRASPWG 376
           P   L+ H   A+   + + L SG+ L + SDT  V G  + +A M   W+ G R   WG
Sbjct: 248 PSELLRRHELPASNILIVENLQSGLALPEMSDTIAVIGGGKNIAWMDAAWLKGKRVGYWG 307


>UniRef50_A7LTN2 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides ovatus ATCC 8483|Rep: Putative
           uncharacterized protein - Bacteroides ovatus ATCC 8483
          Length = 144

 Score = 34.3 bits (75), Expect = 5.7
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 61  IRLNPS---LQEHFPGATQTPFVHLVHSGRQCVKLIRVYAFKHAHVSGATQVALIHVLEQ 117
           I+LNP     Q HFPG    P V L+   ++CV+ IR    +   VS    ++ I+ +E 
Sbjct: 24  IKLNPGHPVYQGHFPGHPVVPGVCLLQLIKECVEDIRQQKLQVTQVSSCKFLSAINPIET 83

Query: 118 TGLQSSLT 125
             +  +LT
Sbjct: 84  PHISMALT 91


>UniRef50_UPI0000DA22E1 Cluster: PREDICTED: similar to WD repeat
           domain 49; n=1; Rattus norvegicus|Rep: PREDICTED:
           similar to WD repeat domain 49 - Rattus norvegicus
          Length = 1157

 Score = 33.9 bits (74), Expect = 7.6
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 31  ISKLSLHKHTLPFEQTPFSQFLQTDLHSPSIRL-NPSLQEH---FPGATQTPFVHLVHSG 86
           +S LSL K  L F+  P   FL T  + P IRL NP + +         QT   HL+ S 
Sbjct: 259 LSSLSLRKGILCFDYCPDRNFLATGGYDPHIRLWNPLVSKRPVWLMKGHQTSVTHLLVSS 318

Query: 87  RQCVKLIRVYAFKHAHV 103
           +    LI +   K+  V
Sbjct: 319 KNASILISISRDKNVRV 335


>UniRef50_Q6ZQU8 Cluster: CDNA FLJ46878 fis, clone UTERU3014906;
           n=1; Homo sapiens|Rep: CDNA FLJ46878 fis, clone
           UTERU3014906 - Homo sapiens (Human)
          Length = 206

 Score = 33.9 bits (74), Expect = 7.6
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 176 IHMLEQTGLHSPLTR-LNPSLQEHLFGATQIPLRQFLHSGLQCVEFIRVYPFKHAHLSGA 234
           IH+      H P+   ++PS+   L     I    F H+ +        +   HAH+   
Sbjct: 21  IHLYIHLSFHLPIYYFIHPSIPLSLHPTILISTHLFAHTSIHPTIHPSAHSSNHAHILAF 80

Query: 235 TQVALLHMLEQTGLHSPLTLLKPSLQEQLFGATQKPLRQFLHWGLQCVEFIRVYPFKHAH 294
             ++LL  +  T +H P   + PS    +       +  ++H  +Q      ++P  H +
Sbjct: 81  IHLSLLSSI-HTSIHPP---IHPSTHPSIHLCIHSSIHPYIHLSIQPSSQPSIHPSIHPY 136

Query: 295 L 295
           +
Sbjct: 137 I 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.325    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,932,411
Number of Sequences: 1657284
Number of extensions: 18072165
Number of successful extensions: 46315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 46257
Number of HSP's gapped (non-prelim): 14
length of query: 399
length of database: 575,637,011
effective HSP length: 102
effective length of query: 297
effective length of database: 406,594,043
effective search space: 120758430771
effective search space used: 120758430771
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 74 (33.9 bits)