Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002535-TA|BGIBMGA002535-PA|undefined
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 29 1.5
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 29 1.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 28 2.0
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 2.0
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 2.7
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 26 8.1
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 26 8.1
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 87 RQCVKLIRVYAFKHAHVSGATQVALIHVLEQTGLQSSLTLLKPSLQEQLFGATQT 141
R C+K + +Y VS + ++ + LEQ + S L ++ L + A T
Sbjct: 521 RDCLKDVEIYTSSERRVSASAEIFAMAFLEQETIPSDLLKVRKDLLDDSNAAKDT 575
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 154 VELIRVYPFKHVHVSGATQVALIHMLEQTGLHSPLTRLNPSLQEHLFGATQIPLRQ 209
VE I + KH+ GA +A IH+ + PL NP+L+E + + ++ ++
Sbjct: 217 VESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWN-NPNLKELIASSRKVVTKE 271
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 75 TQTPFVHLVHSGRQCVKLIRVYAFKHAHVSGATQVALIHVLEQTGLQSSLTLLKPSLQEQ 134
T+TPFV LVH+ Q L + V G + AL + L+S +T P+ +
Sbjct: 364 TETPFVVLVHTSGQFFYL--DFLLDGKSVKGLSLQALDLEINDDFLKSGITCAVPAGENL 421
Query: 135 LFGATQT 141
+F +QT
Sbjct: 422 VFLGSQT 428
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 284 FIRVYPFKHAHLSGATQVALLHMLEQTGLHSSLTRPKPTLQEHLFGATQTPLRQF 338
F+R YP+K + Q H++ Q L S+L +P LQ+ L PL F
Sbjct: 343 FLRCYPYKPQYADRVFQYINEHIINQPSLRSAL-HERP-LQKSLCAILLLPLTYF 395
Score = 27.5 bits (58), Expect = 3.5
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 220 FIRVYPFKHAHLSGATQVALLHMLEQTGLHSPLTLLKPSLQEQLFGATQKPLRQFLHWGL 279
F+R YP+K + Q H++ Q L S L + LQ+ L PL F +
Sbjct: 343 FLRCYPYKPQYADRVFQYINEHIINQPSLRS--ALHERPLQKSLCAILLLPLTYFPSFS- 399
Query: 280 QCVEFIRVYPFKHA 293
C+E P +A
Sbjct: 400 YCLELQNFLPVFNA 413
Score = 26.2 bits (55), Expect = 8.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 157 IRVYPFKHVHVSGATQVALIHMLEQTGLHSPLTRLNPSLQEHLFGATQIPLRQFLHSGLQ 216
+R YP+K + Q H++ Q L S L P LQ+ L +PL F S
Sbjct: 344 LRCYPYKPQYADRVFQYINEHIINQPSLRSALHE-RP-LQKSLCAILLLPLTYF-PSFSY 400
Query: 217 CVEFIRVYPFKHA 229
C+E P +A
Sbjct: 401 CLELQNFLPVFNA 413
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 63 LNPSLQEHFPGATQTPFVHLVHSGR 87
LNP +++HFP T PF H GR
Sbjct: 60 LNPQIKKHFPNTTSFPF-HEKEIGR 83
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 8.1
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 333 TPLRQFLHSGIILADRSDTWTVAGLWEALAGMLWIYGTRASPWGIAGRTAGATHRITRVA 392
T + + +G+I + +WT G AGM + YG S W T T T +A
Sbjct: 47 TTASRSVKTGLISSAVVSSWTWPGTLLTSAGMAYEYGVCGSMWYSFAFTVQITF-FTVIA 105
Query: 393 LHV 395
L V
Sbjct: 106 LQV 108
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.2 bits (55), Expect = 8.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 280 QCVEFIRVYPFKHAHLSGATQVALL-HMLEQTGLHSSLTRPKPTLQEHLF 328
Q + +R PF H + + + HML ++ SL +PTLQ + F
Sbjct: 578 QFIFHLRRSPFLHIFNNSPDETSFYRHMLNVADVNDSLIMIQPTLQSYSF 627
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,646
Number of Sequences: 5004
Number of extensions: 75182
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 17
length of query: 399
length of database: 2,362,478
effective HSP length: 74
effective length of query: 325
effective length of database: 1,992,182
effective search space: 647459150
effective search space used: 647459150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)
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