GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002535-TA|BGIBMGA002535-PA|undefined
         (399 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128711-1|BAC87585.1|  206|Homo sapiens protein ( Homo sapiens ...    34   1.0  

>AK128711-1|BAC87585.1|  206|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46878 fis, clone UTERU3014906. ).
          Length = 206

 Score = 33.9 bits (74), Expect = 1.0
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 176 IHMLEQTGLHSPLTR-LNPSLQEHLFGATQIPLRQFLHSGLQCVEFIRVYPFKHAHLSGA 234
           IH+      H P+   ++PS+   L     I    F H+ +        +   HAH+   
Sbjct: 21  IHLYIHLSFHLPIYYFIHPSIPLSLHPTILISTHLFAHTSIHPTIHPSAHSSNHAHILAF 80

Query: 235 TQVALLHMLEQTGLHSPLTLLKPSLQEQLFGATQKPLRQFLHWGLQCVEFIRVYPFKHAH 294
             ++LL  +  T +H P   + PS    +       +  ++H  +Q      ++P  H +
Sbjct: 81  IHLSLLSSI-HTSIHPP---IHPSTHPSIHLCIHSSIHPYIHLSIQPSSQPSIHPSIHPY 136

Query: 295 L 295
           +
Sbjct: 137 I 137


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,503,012
Number of Sequences: 224733
Number of extensions: 2774582
Number of successful extensions: 5249
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5249
Number of HSP's gapped (non-prelim): 1
length of query: 399
length of database: 73,234,838
effective HSP length: 92
effective length of query: 307
effective length of database: 52,559,402
effective search space: 16135736414
effective search space used: 16135736414
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 66 (30.7 bits)