GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002535-TA|BGIBMGA002535-PA|undefined
         (399 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052061-1|AAK93485.1|  504|Drosophila melanogaster LP10047p pro...    30   6.4  
AM293987-1|CAL25889.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293986-1|CAL25888.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293985-1|CAL25887.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293984-1|CAL25886.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293983-1|CAL25885.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293982-1|CAL25884.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293981-1|CAL25883.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293980-1|CAL25882.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293979-1|CAL25881.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293978-1|CAL25880.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293977-1|CAL25879.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AM293976-1|CAL25878.1|  504|Drosophila melanogaster CG8564 protein.    30   6.4  
AE014296-1254|AAF50565.1|  504|Drosophila melanogaster CG8564-PA...    30   6.4  
AY069468-1|AAL39613.1|  537|Drosophila melanogaster LD20892p pro...    29   8.5  
AF422803-1|AAL56570.1|  537|Drosophila melanogaster MyD88 adapte...    29   8.5  
AE013599-847|AAF58953.1|  537|Drosophila melanogaster CG2078-PA ...    29   8.5  

>AY052061-1|AAK93485.1|  504|Drosophila melanogaster LP10047p
           protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293987-1|CAL25889.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293986-1|CAL25888.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293985-1|CAL25887.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293984-1|CAL25886.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293983-1|CAL25885.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293982-1|CAL25884.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293981-1|CAL25883.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293980-1|CAL25882.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293979-1|CAL25881.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293978-1|CAL25880.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293977-1|CAL25879.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AM293976-1|CAL25878.1|  504|Drosophila melanogaster CG8564 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AE014296-1254|AAF50565.1|  504|Drosophila melanogaster CG8564-PA
           protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 56  LHSPSIRLNPSLQEHFP-----GATQTPFVHLVHSGRQCVKLIRVYAFKHAH--VSGATQ 108
           ++S ++ L+P ++EH P     G      V ++H G  C K + + A  HA   +S +T 
Sbjct: 81  MNSENVELSPQMREHSPRLFDIGPNGRFTVPVIHVGEHCRKTVFIEAGTHAREWISVSTA 140

Query: 109 VALIHVLEQ 117
           +  I+ L +
Sbjct: 141 LNCIYQLTE 149


>AY069468-1|AAL39613.1|  537|Drosophila melanogaster LD20892p
           protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 313 HSSLTRPKPTLQEHLFGATQTPLRQFLHSGIILAD 347
           H +   P P    H++GAT    R++  +G+++A+
Sbjct: 26  HHTHRHPNPPHHHHIYGATDVSYRRYRTAGMVVAE 60


>AF422803-1|AAL56570.1|  537|Drosophila melanogaster MyD88 adapter
           protein protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 313 HSSLTRPKPTLQEHLFGATQTPLRQFLHSGIILAD 347
           H +   P P    H++GAT    R++  +G+++A+
Sbjct: 26  HHTHRHPNPPHHHHIYGATDVSYRRYRTAGMVVAE 60


>AE013599-847|AAF58953.1|  537|Drosophila melanogaster CG2078-PA
           protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 313 HSSLTRPKPTLQEHLFGATQTPLRQFLHSGIILAD 347
           H +   P P    H++GAT    R++  +G+++A+
Sbjct: 26  HHTHRHPNPPHHHHIYGATDVSYRRYRTAGMVVAE 60


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.325    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,514
Number of Sequences: 52641
Number of extensions: 874468
Number of successful extensions: 1996
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1976
Number of HSP's gapped (non-prelim): 34
length of query: 399
length of database: 24,830,863
effective HSP length: 87
effective length of query: 312
effective length of database: 20,251,096
effective search space: 6318341952
effective search space used: 6318341952
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 63 (29.5 bits)