GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002535-TA|BGIBMGA002535-PA|undefined
         (399 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical ...    30   2.5  
AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical ...    30   2.5  
AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical...    30   2.5  
AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical ...    30   2.5  
AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z99281-37|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    29   5.8  
AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical ...    29   7.7  

>Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical
           protein K02B7.2 protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 24  KRNVPLCISKLSLHKHTLPFEQTP 47
           K+   +CI  L L  HTLP EQTP
Sbjct: 162 KKGGKICIVDLGLTSHTLPTEQTP 185


>AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical
           protein W03G1.3 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 24  KRNVPLCISKLSLHKHTLPFEQTP 47
           K+   +CI  L L  HTLP EQTP
Sbjct: 126 KKGGKICIVDLGLTSHTLPTEQTP 149


>AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical
           protein C17B7.13 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 24  KRNVPLCISKLSLHKHTLPFEQTP 47
           K+   +CI  L L  HTLP EQTP
Sbjct: 126 KKGGKICIVDLGLTSHTLPTEQTP 149


>AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical
           protein K02E7.2 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 24  KRNVPLCISKLSLHKHTLPFEQTP 47
           K+   +CI  L L  HTLP EQTP
Sbjct: 123 KKGGKICIVDLGLTSHTLPTEQTP 146


>AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical
           protein R09E12.5 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 24  KRNVPLCISKLSLHKHTLPFEQTP 47
           K+   +CI  L L  HTLP EQTP
Sbjct: 123 KKGGKICIVDLGLTSHTLPTEQTP 146


>AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55F3C.11 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 24  KRNVPLCISKLSLHKHTLPFEQTP 47
           K+   +CI  L L  HTLP EQTP
Sbjct: 126 KKGGKICIVDLGLTSHTLPTEQTP 149


>Z99281-37|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 28  PLCISKLSLHKHTLPFEQTPFSQFLQTDLHSPSIR 62
           P+CIS++SL+     F      QFL+  ++ P++R
Sbjct: 332 PICISRVSLYSRMWRFFDNGLYQFLKYQVYIPAMR 366


>AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical
           protein C30F8.3 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 57  HSPSIRLNPSLQEHFPGATQTPFV 80
           H+PSI++ P  QE +P +   PFV
Sbjct: 158 HTPSIQVAPPAQESYPPSPADPFV 181


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,497,253
Number of Sequences: 27539
Number of extensions: 385539
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 8
length of query: 399
length of database: 12,573,161
effective HSP length: 83
effective length of query: 316
effective length of database: 10,287,424
effective search space: 3250825984
effective search space used: 3250825984
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)