Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002533-TA|BGIBMGA002533-PA|undefined
         (100 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB076400-1|BAB86868.1| 1097|Homo sapiens fat3 protein.                 29   3.0  
M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.                   27   7.0  
AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1, transl...    27   7.0  
AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1, transl...    27   7.0  
AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.              27   7.0  
AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein va...    27   7.0  

>AB076400-1|BAB86868.1| 1097|Homo sapiens fat3 protein.
          Length = 1097

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 28  NTIFCNCKKGCRGRVAVFCSVYHCQGQSCSN 58
           NT  CNCK G  G V     +  C+ + C N
Sbjct: 588 NTFICNCKAGLTG-VTCEEDINECEREECEN 617


>M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.
          Length = 2444

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 27  LNTIFCNCKKGCRGRVAVFC--SVYHCQGQSCSN 58
           +NT FC+C  G RG    FC   +  C    C N
Sbjct: 927 INTAFCDCLPGFRG---TFCEEDINECASDPCRN 957


>AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1,
           translocation-associated (Drosophila) protein.
          Length = 2555

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 27  LNTIFCNCKKGCRGRVAVFC--SVYHCQGQSCSN 58
           +NT FC+C  G RG    FC   +  C    C N
Sbjct: 926 INTAFCDCLPGFRG---TFCEEDINECASDPCRN 956


>AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1,
           translocation-associated (Drosophila) protein.
          Length = 2555

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 27  LNTIFCNCKKGCRGRVAVFC--SVYHCQGQSCSN 58
           +NT FC+C  G RG    FC   +  C    C N
Sbjct: 926 INTAFCDCLPGFRG---TFCEEDINECASDPCRN 956


>AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.
          Length = 2556

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 27  LNTIFCNCKKGCRGRVAVFC--SVYHCQGQSCSN 58
           +NT FC+C  G RG    FC   +  C    C N
Sbjct: 927 INTAFCDCLPGFRG---TFCEEDINECASDPCRN 957


>AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein
           variant protein.
          Length = 2067

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 27  LNTIFCNCKKGCRGRVAVFC--SVYHCQGQSCSN 58
           +NT FC+C  G RG    FC   +  C    C N
Sbjct: 438 INTAFCDCLPGFRG---TFCEEDINECASDPCRN 468


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,439
Number of Sequences: 224733
Number of extensions: 440950
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 73,234,838
effective HSP length: 77
effective length of query: 23
effective length of database: 55,930,397
effective search space: 1286399131
effective search space used: 1286399131
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)