GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002533-TA|BGIBMGA002533-PA|undefined
         (100 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.028
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       27   0.037
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   2.4  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   2.4  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    19   7.5  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    19   7.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    19   9.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 0.028
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 25  KLLNTIFCNCKKGCRGR----VAVFCSVYHCQ-GQSCSNV 59
           +L+N   CNCK G  GR       FC+   CQ G  C+ +
Sbjct: 317 QLVNDYHCNCKLGFMGRHCESKVNFCATSPCQNGGVCTTI 356



 Score = 23.0 bits (47), Expect = 0.61
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 26  LLNTIFCNCKKGCRGRVAVFCSVYHCQGQSCSN 58
           L+N+  C+C  G  G +    +V  C+  +C N
Sbjct: 240 LVNSFSCSCPSGTLGYICEI-NVDDCRPGACHN 271


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 0.037
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)

Query: 32  CNCKKGCRGRVAVFCSV--YHCQGQSCSN 58
           CNCK G +G+    CS+   HC   +C N
Sbjct: 130 CNCKNGWKGKT---CSLKDSHCDHTTCKN 155


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 42  VAVFCSVYHC 51
           V +FCS+Y C
Sbjct: 251 VGIFCSLYFC 260


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory
          receptor candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 42 VAVFCSVYHC 51
          V +FCS+Y C
Sbjct: 76 VGIFCSLYFC 85


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 13  LENFTPLPPAAEKLLNTIFCNCKKGCR 39
           L+ F  +  A + +LN+ FC+  K  R
Sbjct: 83  LDEFLIVALAFQVILNSCFCDPAKWIR 109


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 13  LENFTPLPPAAEKLLNTIFCNCKKGCR 39
           L+ F  +  A + +LN+ FC+  K  R
Sbjct: 83  LDEFLIVALAFQVILNSCFCDPAKWIR 109


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 68   CDFNEETNDSATFEQF 83
            CDF +E    + FE+F
Sbjct: 1405 CDFVDEIEMFSMFERF 1420


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605
Number of Sequences: 317
Number of extensions: 703
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 114,650
effective HSP length: 48
effective length of query: 52
effective length of database: 99,434
effective search space:  5170568
effective search space used:  5170568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)