GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002533-TA|BGIBMGA002533-PA|undefined
         (100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   5.1  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    23   8.9  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    23   8.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 64   IEDSCDFNEETNDSATFEQF 83
            IE+SCDF+ +T +   +++F
Sbjct: 1309 IEESCDFSIQTEEIHLYKKF 1328


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 14  ENFTPLPPAAEKLLNTI 30
           EN  PL P+ +K LN++
Sbjct: 143 ENLAPLAPSNQKFLNSL 159


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 57  SNVQLRTIEDSCDFNEETNDS 77
           SN+ ++  + S  FN ETN+S
Sbjct: 242 SNISIKDQKTSKQFNPETNES 262


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,104
Number of Sequences: 5004
Number of extensions: 12237
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 2,362,478
effective HSP length: 63
effective length of query: 37
effective length of database: 2,047,226
effective search space: 75747362
effective search space used: 75747362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)