GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002533-TA|BGIBMGA002533-PA|undefined
         (100 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0568 + 23339476-23339598,23339686-23339927,23340765-23341308     29   0.63 
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    26   5.8  
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047...    26   5.8  
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    26   5.8  

>01_05_0568 + 23339476-23339598,23339686-23339927,23340765-23341308
          Length = 302

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 20  PPAAEKLLNTIFCNCKKGCRGRVAVFCSVYHCQG 53
           P  A+ L   IF    +G  GRVA  C++ H  G
Sbjct: 183 PRVADALARMIFLGDNRGVLGRVAAPCTLVHASG 216


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 31  FCNCKKGCRGRV-AVFCSVYHCQGQSC 56
           +C C K C+ R     C+   C+ + C
Sbjct: 476 YCGCSKSCKNRFRGCHCAKSQCRSRQC 502


>02_05_0982 -
           33303500-33304011,33304091-33304208,33304606-33304726,
           33304811-33304877,33304968-33305102,33305186-33305297,
           33305852-33306009,33306177-33306300,33306406-33306542,
           33307284-33307403,33307878-33308025,33308674-33308931,
           33309090-33309127,33309232-33309674,33309761-33309845,
           33310063-33310123,33310277-33310453,33311611-33312408,
           33314394-33314693
          Length = 1303

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 24  EKLLNTIFCNCKKGCRGRVAVFCSVYHCQGQSCSNVQLRTIEDSC 68
           +KL N  F   +K C     ++ S+ + +GQ+ + V +  + DSC
Sbjct: 399 QKLRN--FSKARKWCMKSWNMYRSIGNLEGQALAKVNIGNVLDSC 441


>02_05_0975 +
           33227431-33227730,33228556-33228636,33228883-33229680,
           33230829-33231005,33231159-33231274,33231422-33231520,
           33231598-33232040,33232147-33232184,33232343-33232600,
           33233378-33233525,33233989-33234108,33234884-33234984,
           33235090-33235213,33235386-33235498,33236103-33236214,
           33236298-33236432,33236527-33236593,33236685-33236741,
           33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 24  EKLLNTIFCNCKKGCRGRVAVFCSVYHCQGQSCSNVQLRTIEDSC 68
           +KL N  F   +K C     ++ S+ + +GQ+ + V +  + DSC
Sbjct: 426 QKLRN--FSKARKWCMKSWNMYRSIGNLEGQALAKVNIGNVLDSC 468


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,594
Number of Sequences: 37544
Number of extensions: 83360
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 4
length of query: 100
length of database: 14,793,348
effective HSP length: 71
effective length of query: 29
effective length of database: 12,127,724
effective search space: 351703996
effective search space used: 351703996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)