GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002532-TA|BGIBMGA002532-PA|IPR013032|EGF-like region,
IPR000742|EGF-like, type 3, IPR011489|EMI, IPR009030|Growth factor,
receptor
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0810 - 27863988-27864281                                         38   0.034
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377...    32   2.2  
02_04_0413 + 22681957-22682035,22682253-22682788                       31   3.9  
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    31   5.1  

>03_05_0810 - 27863988-27864281
          Length = 97

 Score = 37.9 bits (84), Expect = 0.034
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 94  CQGYKMKDGSCVPICPNGKTGPGCSEDCLSNKWGPNCVNDCEPCDHGTCS 143
           C+GY     SC   C +     GC E CL   +   CVN C P  H TC+
Sbjct: 48  CKGYGRDSSSCSAPCGDPSNKDGC-ESCLEAYYS-KCVNYCGPSCHVTCT 95


>03_05_1019 +
           29736644-29736709,29737156-29737515,29737595-29737735,
           29737912-29738044,29738344-29738457,29738553-29738701,
           29740815-29740907,29741019-29741079,29741180-29741512,
           29742149-29742224,29742322-29742421,29743300-29743369,
           29743987-29744082,29744355-29744402,29744427-29744658,
           29745186-29745246,29745265-29745375
          Length = 747

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 139 HGTCSPVDGTCRCEDGWQGESCELSM 164
           HG C   +G C CE GW G  C  ++
Sbjct: 575 HGICK-ANGICECESGWTGIDCSTAV 599


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 114 GPGCSEDCLSNKWGPNCVNDCEPCDHGTCSPVDGTCRCEDGWQGESC 160
           G GCSE C      P+      PC H  C      C C +G  G  C
Sbjct: 79  GAGCSEQCAECPRPPHPPPSPSPCVHPPCCESAAGCCC-NGCSGGGC 124


>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 130 CVNDCEPCDHGTCSPVDGTCRCEDGWQGESCE 161
           C  DC     G C+   G CRC  G+ G+ CE
Sbjct: 110 CEQDCN--GQGVCNYELGECRCFHGYAGKRCE 139



 Score = 30.7 bits (66), Expect = 5.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 129 NCVNDCEPCDHGTCSPVDGTCRCEDGWQGESCELSMPTTTPATVSKLT-KKPTTKIPARI 187
           +C+N C    HG C    G C+C+ G+ G  C  SMP+         +  +P   +P   
Sbjct: 265 SCINQCS--GHGHCR--GGFCQCDGGYFGIDC--SMPSNYSVAYGMPSWLQPPMNLPDLK 318

Query: 188 NTTPATAIVKL 198
           N + ++  VK+
Sbjct: 319 NISSSSINVKV 329


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,881,853
Number of Sequences: 37544
Number of extensions: 756496
Number of successful extensions: 1304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 6
length of query: 853
length of database: 14,793,348
effective HSP length: 88
effective length of query: 765
effective length of database: 11,489,476
effective search space: 8789449140
effective search space used: 8789449140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)