GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002532-TA|BGIBMGA002532-PA|IPR013032|EGF-like region,
IPR000742|EGF-like, type 3, IPR011489|EMI, IPR009030|Growth factor,
receptor
         (853 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   4.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   7.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   7.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   7.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 158 ESCELSMPTTTPATVSKLTKKPTTKIPA--RINTTPATAIVKLSTETPSA 205
           ES   S   +TPATV+  T   TT +PA     T PAT    ++T   +A
Sbjct: 205 ESKAGSTDASTPATVT--TTGATTTLPAASATGTGPATPSAVVATSNATA 252


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 607 NEKSNFIHIVTTDN 620
           NEK ++ HI TT N
Sbjct: 102 NEKQSYFHIATTSN 115


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 607 NEKSNFIHIVTTDN 620
           NEK ++ HI TT N
Sbjct: 102 NEKQSYFHIATTSN 115


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 101 DGSCVPICPNGKTGPGCSEDCLSNKWGPNCV 131
           DG C   CPN    P C + C      P CV
Sbjct: 47  DGRCQRFCPNVVPKPLCIKIC-----APGCV 72


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 101 DGSCVPICPNGKTGPGCSEDCLSNKWGPNCV 131
           DG C   CPN    P C + C      P CV
Sbjct: 47  DGRCQRFCPNVVPKPLCIKIC-----APGCV 72


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 607 NEKSNFIHIVTTDN 620
           NEK ++ HI TT N
Sbjct: 41  NEKQSYFHIATTSN 54


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,650
Number of Sequences: 429
Number of extensions: 7962
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 853
length of database: 140,377
effective HSP length: 64
effective length of query: 789
effective length of database: 112,921
effective search space: 89094669
effective search space used: 89094669
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)