Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002530-TA|BGIBMGA002530-PA|IPR001548|Peptidase M2,
peptidyl-dipeptidase A
         (73 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.2  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 22  TGDVRKEQYNCHWW 35
           +  V +  Y+CHW+
Sbjct: 184 SSSVMEAAYSCHWY 197


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 5   AFLPFALVMDRWRWDVFTGDV 25
           A L   L   +W++DV++ DV
Sbjct: 373 AVLAGVLGQRQWQFDVYSKDV 393


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 30  YNCHWWRL 37
           Y C WW++
Sbjct: 486 YPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 30  YNCHWWRL 37
           Y C WW++
Sbjct: 539 YPCCWWKI 546


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.144    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,355
Number of Sequences: 429
Number of extensions: 1010
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 73
length of database: 140,377
effective HSP length: 46
effective length of query: 27
effective length of database: 120,643
effective search space:  3257361
effective search space used:  3257361
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.8 bits)
S2: 36 (18.6 bits)