GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002530-TA|BGIBMGA002530-PA|IPR001548|Peptidase M2,
peptidyl-dipeptidase A
         (73 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    19   4.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    19   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   4.1  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    19   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   7.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    18   9.4  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 38  REQYQGVKPPVLRSELDFDPGSKYHIPANIP 68
           R   Q VK   L+  LD D     H   N+P
Sbjct: 611 RSPDQNVKKINLKHALDLDRRGLLHRQFNLP 641


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 38  REQYQGVKPPVLRSELDFDPGSKYHIPANIP 68
           R   Q VK   L+  LD D     H   N+P
Sbjct: 611 RSPDQNVKKINLKHALDLDRQGLLHRQFNLP 641


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 40   QYQGVKPPVLRSELDFDPGSKYHIPANI 67
            QY  ++ P + +   F  GSK  +  N+
Sbjct: 1123 QYPDLRSPAVSNVTTFMEGSKATVKNNV 1150


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 40   QYQGVKPPVLRSELDFDPGSKYHIPANI 67
            QY  ++ P + +   F  GSK  +  N+
Sbjct: 1123 QYPDLRSPAVSNVTTFMEGSKATVKNNV 1150


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
          acetylcholinesterase protein.
          Length = 50

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 36 RLREQYQGVKPPVLRSEL 53
          RLR ++ G KPP  R ++
Sbjct: 23 RLRIRHHGDKPPQERPKV 40


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 53   LDFDPGSKYHI 63
            LD DP   YH+
Sbjct: 1552 LDLDPACWYHL 1562


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 37  LREQYQGVKPPVLRSELDFDPGSKYHIPANIPYIR 71
           LRE+  GV     R+    +PG    +   +P +R
Sbjct: 338 LREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALR 372


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.144    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,579
Number of Sequences: 317
Number of extensions: 699
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 73
length of database: 114,650
effective HSP length: 45
effective length of query: 28
effective length of database: 100,385
effective search space:  2810780
effective search space used:  2810780
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.3 bits)
S2: 35 (18.2 bits)