GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002530-TA|BGIBMGA002530-PA|IPR001548|Peptidase M2,
peptidyl-dipeptidase A
         (73 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   0.53 
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   1.2  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    22   8.6  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 35  WRLREQYQGVKPPVLRSELDFDPGSKYH-IPANIP 68
           +R R+ Y+G  PP+   E  FD G+ +H  P+ +P
Sbjct: 557 FRGRKPYRG-GPPIHHGERHFDSGNDWHGNPSTVP 590


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 7/14 (50%), Positives = 13/14 (92%)

Query: 37  LREQYQGVKPPVLR 50
           +R++Y G+KPPV++
Sbjct: 107 IRQRYMGIKPPVVK 120


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 36  RLREQYQGVKPPVLRSELDFDPGSKYHIP 64
           +L+E+   +K  + +SE + DP  K  +P
Sbjct: 310 KLKEEKAKIKNQLFKSEEEKDPVGKQKLP 338


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.144    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,965
Number of Sequences: 5004
Number of extensions: 13159
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 3
length of query: 73
length of database: 2,362,478
effective HSP length: 53
effective length of query: 20
effective length of database: 2,097,266
effective search space: 41945320
effective search space used: 41945320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)