Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002530-TA|BGIBMGA002530-PA|IPR001548|Peptidase M2,
peptidyl-dipeptidase A
(73 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0160 - 20794974-20795977,20796241-20796295 28 0.80
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 1.1
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 27 1.4
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 27 2.4
09_04_0128 + 14891194-14891946 26 3.2
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685... 26 4.3
06_01_0040 - 393818-393938,394331-394389,394595-394756,394875-39... 25 5.6
06_03_0977 - 26488131-26488379 25 7.4
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 25 7.4
04_04_0937 - 29515561-29515758,29515914-29516301,29516925-295170... 25 7.4
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 25 9.8
04_01_0391 + 5143157-5143596,5144826-5145139,5145359-5145426 25 9.8
>11_06_0160 - 20794974-20795977,20796241-20796295
Length = 352
Score = 28.3 bits (60), Expect = 0.80
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 22 TGDVRKEQYNCHWWRLREQYQGVKPPVLRSELDFDPGSKYHIPANIPYI 70
T +R++ +WW Q + PP L S L+ D G Y IP+ + +I
Sbjct: 89 TCTIRQDWSPHYWWARTGQPNQILPPPLPSLLEAD-GYLYFIPSALCFI 136
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 35 WRLREQYQGVKPPVLRSELDFDPGSKYHIP 64
WRLR++ G PP R + +PG +H P
Sbjct: 85 WRLRQRGPGAAPPRRRVYVCPEPGCVHHNP 114
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 1 MDKLAFLPFALV---MDRWRWDVFTGDVRKEQYNCHWW 35
M LA P L+ + WRW FT + K + WW
Sbjct: 342 MSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWW 379
>08_01_0609 +
5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 WRWDVFTGDVRKEQYNCHWW 35
WRW FT + K + + WW
Sbjct: 934 WRWRPFTERLHKSELSGDWW 953
>09_04_0128 + 14891194-14891946
Length = 250
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 17 RWDVFTGDVRKEQYNCHWWRLREQYQG 43
RW+ G R+E WWR R Y G
Sbjct: 19 RWEAHGG--REEMEAARWWRSRRIYDG 43
>06_03_0311 +
19466258-19466303,19466496-19467087,19468059-19468524,
19470028-19470081,19470112-19470226,19470499-19470605
Length = 459
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 31 NCHWWRLREQYQGVKPPVLRSELDFDPGSKYHIPANIPYIRMR 73
N +W Y K R LD+ + YH+ A PY R++
Sbjct: 194 NAPFWINAYPYFAYKGDPTRVSLDYALSNPYHVGAIDPYTRLQ 236
>06_01_0040 -
393818-393938,394331-394389,394595-394756,394875-395085,
395174-395290,395794-395859,396020-396292,397410-397492,
398322-398327,398738-398797,399093-399137,399530-399639,
400412-400510,400599-400796,401463-401517,401571-401628,
402191-402360
Length = 630
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 4 LAFLPFALVMDRWRW 18
L FLPFA+V++R +W
Sbjct: 375 LFFLPFAVVLERKKW 389
>06_03_0977 - 26488131-26488379
Length = 82
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 14 DRWRWDVFTGDVRKEQYNCHWWRLREQYQGVKPPV 48
DRW DV D R+ + + W R R Q+Q + P+
Sbjct: 47 DRWLEDV---DGRRWEVDADWGRRRRQWQLARLPL 78
>04_04_1192 +
31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 33 HWWRLREQYQGVKP------PVLRSELDFDP 57
HWW++R+Q+ ++ P+L+ D+ P
Sbjct: 459 HWWKIRDQWASLQKGDDDILPILKLSYDYLP 489
>04_04_0937 -
29515561-29515758,29515914-29516301,29516925-29517091,
29517577-29517783
Length = 319
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 27 KEQYNCHWWRLREQYQGVKPPVLRSE-----LDFDPGSKYHIPANIPY 69
KEQ H R YQ +P V E D DP + IP N P+
Sbjct: 165 KEQQAMHQKRRSRTYQWKRPTVFLKEGDSLPPDVDPDTVRWIPVNHPF 212
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 25 VRKEQYNCHWWRLREQYQGVKPPVLRSELDFDPGSKYHIPANIPYIRMR 73
VR +N + +R QY G P L F S H NIP + ++
Sbjct: 95 VRTSMWNWKGYNIRYQYAGTSGPALVLIHGFGANSD-HWRKNIPVLALK 142
>04_01_0391 + 5143157-5143596,5144826-5145139,5145359-5145426
Length = 273
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 32 CHWWRLREQYQGVKPPVLRSELDFDPGSKYH 62
C W+ + +QG P L ++D D S +H
Sbjct: 118 CRWFTAGDNHQGSLAPRLMLDVDEDNLSTWH 148
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.144 0.510
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,112
Number of Sequences: 37544
Number of extensions: 84530
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 12
length of query: 73
length of database: 14,793,348
effective HSP length: 53
effective length of query: 20
effective length of database: 12,803,516
effective search space: 256070320
effective search space used: 256070320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)
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