GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002529-TA|BGIBMGA002529-PA|IPR001548|Peptidase M2,
peptidyl-dipeptidase A
         (169 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    31   0.48 
04_04_1387 - 33172555-33173053,33173136-33173872                       28   3.4  
02_01_0351 - 2535305-2535627,2535707-2535842,2535942-2535977,253...    27   6.0  
08_02_1539 - 27690412-27690588,27690694-27690834,27691493-276915...    27   7.9  
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    27   7.9  

>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 38  MWGQSWLLDVSQEMAKQGFTPLTMFQLAEEYFVSMNMSAMPPDFWALSVLDQPPDRH 94
           M+G  W +      A   FT +  F LA  +F+S  ++     FW  S +D+  D H
Sbjct: 94  MYGGGWNITNKHYWASVSFTGIAGFVLAAGWFISFGIAVAASCFWK-SRIDKENDFH 149


>04_04_1387 - 33172555-33173053,33173136-33173872
          Length = 411

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 104 FCNKHDYRIKMCTHVDMKDLVTAHHEMAHIE 134
           F  +H  R++   H D  +L+ AHH +A ++
Sbjct: 125 FVGRHPIRVRPWPHPDPNELLKAHHILAAVQ 155


>02_01_0351 -
           2535305-2535627,2535707-2535842,2535942-2535977,
           2536057-2536173
          Length = 203

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 11  VRRRLREAYGPERISRSAPLP 31
           VRR +RE Y PER+S S   P
Sbjct: 160 VRRSVRERYSPERLSLSGRRP 180


>08_02_1539 -
           27690412-27690588,27690694-27690834,27691493-27691588,
           27691694-27691786,27691909-27692103,27692340-27692438,
           27692527-27692753,27692841-27692973
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 11  VRRRLREAYGPERISRSAPLPAHILGDMWGQSWLLDVSQEMAKQGFTPLTM 61
           VRR L E Y    + R  P PA  L D WG +    V+ +++K    P T+
Sbjct: 87  VRRALDEGYDVRCLVRPRPAPADFLRD-WGAT---VVNADLSKPETIPATL 133


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 8   HAYVRRRLREAYGPERISRSAPLPAHILGDMWGQSWLLDVSQEMAKQGFTPLTMFQLAEE 67
           H Y+R  +   +GPE + R+     H        SWL   S E+ K   + + +F +  +
Sbjct: 51  HKYIRNLILRLFGPENLRRAMLQDVHRTAQASLLSWLDRPSIEL-KDAVSSM-IFSVTAK 108

Query: 68  YFVSMNMSAMPPDFW 82
             +S +  A     W
Sbjct: 109 KLISYDSLASDGKMW 123


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,724,512
Number of Sequences: 37544
Number of extensions: 235848
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 5
length of query: 169
length of database: 14,793,348
effective HSP length: 77
effective length of query: 92
effective length of database: 11,902,460
effective search space: 1095026320
effective search space used: 1095026320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 57 (27.1 bits)