GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002527-TA|BGIBMGA002527-PA|IPR001548|Peptidase M2,
peptidyl-dipeptidase A, IPR006025|Peptidase M, neutral zinc
metallopeptidases, zinc-binding site
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0713 - 5332145-5332351,5332675-5332893,5334347-5334559,533...    36   0.076
01_07_0380 + 43181564-43181639,43182053-43182218,43182494-431826...    36   0.10 
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647     36   0.13 
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    32   1.2  
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18...    30   6.6  

>02_01_0713 -
           5332145-5332351,5332675-5332893,5334347-5334559,
           5334637-5334730,5334860-5335020,5335114-5335315,
           5335619-5335784,5336208-5336286
          Length = 446

 Score = 36.3 bits (80), Expect = 0.076
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 74  LLQVSLEVASETKEYWKETMSYLWHEFEDPDLKRMFKKYTEL--GTSALPEDLNQRLIVA 131
           LL   LEV     E +++  S L H+    + +  + KY EL  G+S++ ++L+Q L+ A
Sbjct: 55  LLNAVLEVEPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQ-LLQA 113

Query: 132 INSMQSTYAKATICDYN 148
            N+++S Y +    D++
Sbjct: 114 QNALESAYGQFESHDFS 130


>01_07_0380 +
           43181564-43181639,43182053-43182218,43182494-43182695,
           43182789-43182949,43183079-43183172,43183250-43183462,
           43184917-43185135,43185458-43185661
          Length = 444

 Score = 35.9 bits (79), Expect = 0.10
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 74  LLQVSLEVASETKEYWKETMSYLWHEFEDPDLKRMFKKYTEL--GTSALPEDLNQRLIVA 131
           LL   LEV     E +++  S L H+    + +  + KY EL  G+S++ ++L+Q L+ A
Sbjct: 54  LLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQ-LLQA 112

Query: 132 INSMQSTYAKATICDYN 148
            N+++S Y +    D++
Sbjct: 113 QNALESAYGQFESHDFS 129


>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
          Length = 263

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 190 KSNFTEYVQMENEAAKLNGYDTVAEWWLSEYEATDSEDQFAALWAQIKPLYEQIHA 245
           KS F    Q + E     GYDT A  W   YE T  E +  + W   KPL+++ HA
Sbjct: 28  KSKFFLEHQAKWEKEGNKGYDTNAHGWRFAYELTFPEGEIPSDWGYSKPLWDE-HA 82


>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 492 EPP-APRSEADFDPAAKYHIAADVEYMRYYISYIIQFQFHRSLCQLAGEYAVGDSSRLLS 550
           EPP    +E D+  A    I +++EYM+  +S +  F +  ++  +   Y + D  R  S
Sbjct: 352 EPPNCFLTETDYIDAKILRIDSEIEYMKKMLSEVCAFDYRPAIMPILKAY-IRDKLRKAS 410

Query: 551 NCDIYN 556
           +C +++
Sbjct: 411 SCGVFD 416


>02_01_0031 -
           187798-187887,187996-188179,188468-188640,188917-189399,
           189557-190213,190821-190837,191501-192041
          Length = 714

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 58  ASWDYETNLTVHNEQKLLQVSLEVASETKEYWKE 91
           A+W+++ NL V   + L+Q  L    E+++ W E
Sbjct: 206 AAWEFDQNLNVAAARALMQTGLRSCPESEDMWIE 239


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,708,824
Number of Sequences: 37544
Number of extensions: 800981
Number of successful extensions: 1549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 5
length of query: 649
length of database: 14,793,348
effective HSP length: 87
effective length of query: 562
effective length of database: 11,527,020
effective search space: 6478185240
effective search space used: 6478185240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)