Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002526-TA|BGIBMGA002526-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site, IPR001548|Peptidase
M2, peptidyl-dipeptidase A
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 32 0.29
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 29 2.7
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 28 3.5
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 28 4.6
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 6.1
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 27 6.1
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 6.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 8.1
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 27 8.1
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 481 KLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAA 540
KL E +Q + ++ A + + + +Y ++Y+ ++QF+ L +L G+ +
Sbjct: 897 KLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQS 956
Query: 541 GDPNKKLVDCDIYQSVAAGNALA 563
G ++ V +Y G A+A
Sbjct: 957 G--GERSVSTIMYLLSLQGLAIA 977
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 469 KTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYARYYVSFIIQF-QF 527
+TL +YN H W + ++ P+N + D + V+A + + F +F Q+
Sbjct: 645 ETLKPEYNPHSWNSNASVIFLDQPINTGFSNGDDSVLDTVTAGKDVYAFLNLFFAKFPQY 704
Query: 528 HRALCQLAGEHAAG 541
+AGE AG
Sbjct: 705 AHLDFHIAGESYAG 718
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 189 KKNFTDYVNLYNEAAKLNGFDNVAEWWQSEYEVPDFEEQLAKLWEDVKPL-YQQLHAYVR 247
K F+D NL A + FD+ ++++ E ++ F E + E+++ + + + H++ +
Sbjct: 779 KPMFSDEENLSEIAHSEDEFDDTVDFFEDENDLLPFNETDDE--EEIQTVDHSETHSH-K 835
Query: 248 KRLRDKYGDKVVSARGPIPAHLLGN 272
K+ R D V A AHLL N
Sbjct: 836 KKKRKAIKDLPVFADAESYAHLLEN 860
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 3.5
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 67 KENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKFQA 126
KE E+ + L LS A E ++Y +D K +L A L DD+F A
Sbjct: 34 KEEEKDPEKKRLRLSENIPATIESKRVYDETIIED-------KPDEELQ-AELKDDEFSA 85
Query: 127 LMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGA 186
E + + K S+ E+ + F ++ + +E H A A
Sbjct: 86 YFSE----ERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGD--IEVHEIAEA 139
Query: 187 TAKKNFTDYVNLYNEAAKLN 206
AK+ +TD + L + K N
Sbjct: 140 AAKRGYTDLLVLNEDRKKTN 159
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 217 SEYEVPDFEEQLAKLWEDVKPLYQQLHAYVRKRLRDKYGDKVVSARGPIPA 267
+E+ D E + + +V ++L Y+ K +R+KY +V R P+
Sbjct: 342 TEFTGLDLEMAFNEHYHEVMEFIEKLFLYIFKTIREKYAKQVAVVRQQYPS 392
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 272 NMWAQTWNNIESFTRPYPDKKEIDVTQAMRDQNYTPMKMFQMSDE 316
N A W FT P P+ +E + + Y + +M+DE
Sbjct: 119 NAVAMPWEVKNMFTEPVPETEEFEEDNDTMEMAYATRQRLKMADE 163
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/89 (22%), Positives = 36/89 (40%)
Query: 423 RVGLATGDAEDEQTEINQLYKMGIDKIAFLPFAYTLDLFRYGVFRRKTLPEDYNCHYWKL 482
++ L + + E Q++I LY+ + L T+ + LPE+
Sbjct: 529 KLELLSAENEYFQSQITSLYQESSFQKRLLMLQLTVLIVLTVYMAVSRLPENLPTTRSSS 588
Query: 483 REQLQGVEPPVNRTEDDFDAAAKYHVSAN 511
++ PP +R E D A + VSA+
Sbjct: 589 NNPIEASRPPFSRDEQDISKANDFRVSAS 617
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 220 EVPDFEEQLAKLWEDVKPLYQQLHAYVRKRLRD 252
E+ F+ +L+ L++D+K + QLH Y + + D
Sbjct: 464 ELNSFQGELSSLFKDLKLVKSQLHDYPKPEVSD 496
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 23 QGRDPDLEAREHEAREYM-----LHLDKATGLRKNRASLAEWEYTSNITKENEEKSIQTH 77
Q R L A E + R+ + LH DK + +A+ E Y + KE Q +
Sbjct: 1034 QKRTVLLNAEERKVRDLLQKVMTLHTDKEAKRKAKKAAEHE-RYHKRMQKEE-----QAY 1087
Query: 78 LELSRQEKAAW 88
+E R+EKA W
Sbjct: 1088 IEKKREEKAEW 1098
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 509 SANVEYARYYVSFIIQFQFHRALCQLAGEHAAGDPNKKLVDCDIYQS 555
S+ Y S I FH C A H P +K +D DI Q+
Sbjct: 211 SSIAPYKNSSSSVIPDSSFHSVACYRASSHYKEAPVEKSIDIDIIQN 257
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,350
Number of Sequences: 5004
Number of extensions: 138484
Number of successful extensions: 355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 13
length of query: 648
length of database: 2,362,478
effective HSP length: 77
effective length of query: 571
effective length of database: 1,977,170
effective search space: 1128964070
effective search space used: 1128964070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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