GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002525-TA|BGIBMGA002525-PA|IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily, IPR011701|Major
facilitator superfamily MFS_1
         (579 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   9.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 150 YPTITSEMDWICDRGSYQATAQALFFVGSII--GGFLIGWVADRYGRLPAAVYSTLIGCL 207
           Y  +  ++ +  DR  Y  T   +F  G I+    F+  W+   +  +PA V   +   L
Sbjct: 287 YSCLKVDLIFTRDRAFYFTT---VFIPGIILVTSSFITFWL--EWNAVPARVMIGVTTML 341

Query: 208 GGILTTFARNFTEFSIYRFIAGMAYDN-CMMMAYLILLEYVTPKY 251
               T+     T   +    A   +D  CM   Y  LLE+V   Y
Sbjct: 342 NFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY 386


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 150 YPTITSEMDWICDRGSYQATAQALFFVGSII--GGFLIGWVADRYGRLPAAVYSTLIGCL 207
           Y  +  ++ +  DR  Y  T   +F  G I+    F+  W+   +  +PA V   +   L
Sbjct: 256 YSCLKVDLIFTRDRAFYFTT---VFIPGIILVTSSFITFWL--EWNAVPARVMIGVTTML 310

Query: 208 GGILTTFARNFTEFSIYRFIAGMAYDN-CMMMAYLILLEYVTPKY 251
               T+     T   +    A   +D  CM   Y  LLE+V   Y
Sbjct: 311 NFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY 355


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 150 YPTITSEMDWICDRGSYQATAQALFFVGSII--GGFLIGWVADRYGRLPAAVYSTLIGCL 207
           Y  +  ++ +  DR  Y  T   +F  G I+    F+  W+   +  +PA V   +   L
Sbjct: 307 YSCLKVDLIFTRDRAFYFTT---VFIPGIILVTSSFITFWL--EWNAVPARVMIGVTTML 361

Query: 208 GGILTTFARNFTEFSIYRFIAGMAYDN-CMMMAYLILLEYVTPKY 251
               T+     T   +    A   +D  CM   Y  LLE+V   Y
Sbjct: 362 NFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY 406


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 150 YPTITSEMDWICDRGSYQATAQALFFVGSII--GGFLIGWVADRYGRLPAAVYSTLIGCL 207
           Y  +  ++ +  DR  Y  T   +F  G I+    F+  W+   +  +PA V   +   L
Sbjct: 256 YSCLKVDLIFTRDRAFYFTT---VFIPGIILVTSSFITFWL--EWNAVPARVMIGVTTML 310

Query: 208 GGILTTFARNFTEFSIYRFIAGMAYDN-CMMMAYLILLEYVTPKY 251
               T+     T   +    A   +D  CM   Y  LLE+V   Y
Sbjct: 311 NFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY 355


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 346 SKETKEESHSCLEIFKRPPIRRTFILMCLEFTCCTIIFDALV 387
           SK   EES  C  + +  P    + L C+ F    ++F A++
Sbjct: 183 SKRNSEESAICAMLKENMPEFPLYQLSCILFFLIPMVFIAVL 224


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,493
Number of Sequences: 429
Number of extensions: 6091
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 579
length of database: 140,377
effective HSP length: 61
effective length of query: 518
effective length of database: 114,208
effective search space: 59159744
effective search space used: 59159744
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)