GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002524-TA|BGIBMGA002524-PA|undefined
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    45   2e-05
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    40   7e-04
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    32   0.14 
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    29   1.3  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   3.1  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   7.2  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   7.2  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   7.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   7.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   7.2  

>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 98  WRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYWMHRACHEVHILWAQHQVH 157
           W  AE + Y+++Y N     L +    +     +  DF  YW HR  H  ++    H++H
Sbjct: 95  WFLAELHGYSYLYDNISDYGLKY-FLCSLPLFVMFSDFGIYWAHRFLHHRYVYPRLHKLH 153

Query: 158 HTSEDFNMGVGIRQSVLQGWCGFIFYLPLAFAIPPAQFVVHHQFSYLYMFWIHTEAIKSL 217
           H    + +         +   GF+  LP  + + P  F + H+ +YL +F         +
Sbjct: 154 H---KWIICTPYASHAFKSADGFLQSLP--YHLFPFFFPL-HKLTYLALFTFVNFWSIMI 207

Query: 218 GPLEYILNTP-SHHRVHHGSNKYCLDVNYGGVLIVWDRLFGTFK 260
              +YI N P  +   HH  +    + NYG    ++DRL  +F+
Sbjct: 208 HDGKYISNNPIINGAAHHNGHHIYFNYNYGQFTTLFDRLGNSFR 251


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 134 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYLPLAFAIPPA 193
           DF  YW+HRA H   +    H++HH               L G+   + Y    F  P  
Sbjct: 163 DFLIYWIHRALHHRWLYAPLHKLHHKWIVPTPYSSHAFHYLDGYSQSLPYHMFPFFFPLN 222

Query: 194 QFVVHHQFSYLYMFWIHTEAIKSLGPLEYILNTPSHHRVHHGSNKYCLDVNYGGVLIVWD 253
           ++V    F  +  + +     K       ++N  +HH  HH    Y    NYG    ++D
Sbjct: 223 KYVYLLLFGSVNYWTVLIHDGKYFSN-NAVVNGAAHHAAHHMYFNY----NYGQFFTLFD 277

Query: 254 RLFGTFK 260
           RL  +++
Sbjct: 278 RLCSSYR 284


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 252 WDRLFGT-FKPETDKIEIVYGLIYNQPSFNPLYLQSFYNGYVLEKFRSYESWGDKMRAIF 310
           W RL    F  E   I +V  ++ +Q  F P     F++   L + + +    DK++A+F
Sbjct: 86  WLRLLSAKFPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFRGAYDKLQAVF 145

Query: 311 W 311
           W
Sbjct: 146 W 146


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 296 FRSYESWGDKMRAIFWGPSWEPGSPRLGDEDMKVDVENREKYDVHLPAWCNAYLVTHYAV 355
           ++    W D  R+    P WE GS  L  E+M+  V+ + K    +   C  + + HY  
Sbjct: 100 YKDNNHWSD--RSSTGSPRWENGSMNLSVEEMEKVVQPKVK---RMATICQMFFLDHYFE 154

Query: 356 VLYGFFELASR 366
            L+  +    R
Sbjct: 155 QLHYLYTRKQR 165


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 95  RIIWRGAESYLYTWIYTNYRLVELPWDST 123
           R IWRG   Y++  +YTN+ +V   W+ T
Sbjct: 9   RDIWRGKCIYVFRCLYTNHAVVS--WNQT 35


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 436 AMFWCLNMLKLLEIKKTRKVD 456
           A+ W L  +KLLE+K+ RKVD
Sbjct: 82  AIDWDLLFVKLLELKQGRKVD 102


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 31  YINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRL 70
           +  SP   +F KK DV N  K    Y+F   +L  +  R+
Sbjct: 466 FSESPVYQLFHKKFDVQNVLKNDSGYWFQLQLLIDVYSRM 505


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 335 EKYDVHLPAWCNAYLVTHYAVVLYGFFELASRHMGMTPISVLIFVVYIIA 384
           + +++++ +    +  +   V+    FEL  RH G  P  V  ++ Y+IA
Sbjct: 472 QSHEIYIASAMMEHHCSRDPVIASRIFELGMRHFGDVPAYVYKYLSYLIA 521


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 219  PLEYILNTPSHHRVHHGSNKYCLDVNYGGVLIVWDRLFGTFKPETDKIEIVYGLIYNQPS 278
            P++ I     +  +   +  YC  VN  G ++V D+L   +   +D+  I+    Y   +
Sbjct: 2386 PIQTIAVNARNAEIAFSTGFYCCVVNVNGKILVKDKLSRIYNENSDE-NILCSCFYTGAN 2444

Query: 279  FNPLYLQSFYNGY 291
               L+   F  G+
Sbjct: 2445 SEWLHKNLFITGH 2457


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 143 ACHEVHILWAQHQVHHTSEDFNM-GVGIR 170
           +CH V  LW  H   H  E  +M GV ++
Sbjct: 53  SCHSVGCLWGHHGEEHAMEHTHMIGVDVK 81


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.142    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,076
Number of Sequences: 5004
Number of extensions: 102543
Number of successful extensions: 260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 12
length of query: 456
length of database: 2,362,478
effective HSP length: 75
effective length of query: 381
effective length of database: 1,987,178
effective search space: 757114818
effective search space used: 757114818
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)