Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002524-TA|BGIBMGA002524-PA|undefined
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 51 2e-06
01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920 50 4e-06
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392... 41 0.002
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 39 0.007
02_04_0652 - 24742182-24742186,24742535-24742767,24742869-247430... 37 0.038
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 35 0.16
10_08_0816 + 20789399-20789728,20790098-20790420,20791437-207915... 34 0.27
11_08_0095 - 28323425-28323494,28323577-28323657,28323744-283241... 33 0.47
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 33 0.63
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 33 0.63
02_04_0651 - 24737953-24738114,24738205-24738375,24738534-247386... 32 0.83
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435... 32 1.1
02_05_0734 + 31318380-31318610,31319422-31319988 31 1.4
06_01_0867 - 6600847-6601413,6601954-6602181 31 1.9
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 31 1.9
06_03_0177 - 17579474-17580109,17580549-17580626,17581160-175813... 29 5.8
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 5.8
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 51.2 bits (117), Expect = 2e-06
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 31/170 (18%)
Query: 119 PWDSTLTWYAAAL----GVDFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVL 174
PW ST A+ V+F YYW+HRA H H L+A++ HH + + SV+
Sbjct: 121 PWWSTKGMVVTAVLHAGPVEFLYYWLHRALHH-HWLYARYHSHHHASIVTEPI---TSVI 176
Query: 175 QGWCGFIFYLPLAFAIPPAQFVVHHQFSYLYM--FWIHTEAIKSLG-------------- 218
+ + Y L AIP V S + + ++ + + LG
Sbjct: 177 HPFAEEVVYFVL-LAIPILSTVATGTVSVVTANGYLVYIDFMNYLGHCNFELVPKCLFHV 235
Query: 219 --PLEYILNTPSHHRVHHGSNKYCLDVNYGGVLIVWDRLFGTFKPETDKI 266
PL+Y+L TPS H +HH + NY + V+D ++GT +D++
Sbjct: 236 FPPLKYLLYTPSFHSLHHTQFR----TNYSLFMPVYDYIYGTTDKSSDEL 281
>01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920
Length = 274
Score = 50.0 bits (114), Expect = 4e-06
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 9/161 (5%)
Query: 108 WIYTNYRLVELPWDSTLTWYAAAL-GVDFCYYWMHRACHEVHILWAQ-HQVHHTSEDFNM 165
W + E+ W L + A L V+F YWMHR H++ L+ H HH N
Sbjct: 114 WTQCYVNISEVGWPMYLVYLALYLIFVEFGIYWMHRELHDIKPLYKYLHTYHHIYNKENT 173
Query: 166 GVGIRQSVLQGWCGFIFYLPLAFA--IPPAQFVVHHQFSYLYMFWIHTEAIKSLGPLEYI 223
G + +P FA + P F H ++ W T + +
Sbjct: 174 LSPFAGLAFHPLDGILQAIPHVFALYLIPTHFRTHIALLFIEAVWT-TNIHDCIHGKVWP 232
Query: 224 LNTPSHHRVHHGSNKYCLDVNYGGVLIVWDRLFGTFKPETD 264
+ +H +HH + ++ NYG + D +FGT + D
Sbjct: 233 VMGAGYHTIHHTTYRH----NYGHYTVWMDWMFGTLREPED 269
>09_04_0189 +
15438538-15438591,15438671-15438891,15438982-15439214,
15439322-15439541,15440091-15440212,15441086-15441339,
15441425-15441532,15441622-15441828,15441929-15442213,
15442312-15442467
Length = 619
Score = 41.1 bits (92), Expect = 0.002
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 115 LVELP-WDSTLTWYAAALGV---DFCYYWMHRACHEVHILWAQHQVHHTSE-DFNMGVGI 169
L LP WD+ AA L V + +Y HRA H H+ H HH+++ G
Sbjct: 113 LRHLPLWDARGLAVAALLHVAATEPLFYAAHRAFHRGHLFSCYHLQHHSAKVPQPFTAGF 172
Query: 170 RQSVLQGWCGFIFYLPLAFAIPPAQFVVHHQFSYLYMF-------WIHTEA-----IKSL 217
+ Q G + +PLA A V F+Y+ F + E +SL
Sbjct: 173 ATPLEQLVLGALMAVPLAAACAAGHGSVALAFAYVLGFDNLRAMGHCNVEVFPGGLFQSL 232
Query: 218 GPLEYILNTPSHHRVHHGSNKYCLDVNYGGVLIVWDRLFGTFKPET 263
L+Y++ TP++H +HH D N+ + ++D + GT ++
Sbjct: 233 PVLKYLIYTPTYHTIHHTKE----DANFCLFMPLFDLIGGTLDAQS 274
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 39.1 bits (87), Expect = 0.007
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 134 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYLPLAFAIPPA 193
D+ YW+HR +H WA H +H +F +G W + AFA PA
Sbjct: 137 DYLGYWIHRL---LHTPWAYHHIHRVHHEFTAPMGYAAPYAH-WAEILILGFPAFA-GPA 191
Query: 194 QFVVHHQFSYLYMFWIHTEAIK-------SLGPLEYI--LNTPSHHRVHHGSNKYCLDVN 244
H +L+ H EAI P +YI +H HH + N
Sbjct: 192 IVPCHMTTFWLWFVLRHLEAIHIHSGFKLPFDPTKYIPLYGGVEYHDYHHFVGGHS-QSN 250
Query: 245 YGGVLIVWDRLFGT 258
+ V D ++GT
Sbjct: 251 FSSVFTFCDYIYGT 264
>02_04_0652 -
24742182-24742186,24742535-24742767,24742869-24743092,
24743343-24743402
Length = 173
Score = 36.7 bits (81), Expect = 0.038
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 133 VDFCYYWMHRACHEVHILWAQHQVHH 158
V+F YYW HRA H H L++++ HH
Sbjct: 138 VEFLYYWFHRALHH-HFLYSRYHSHH 162
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 34.7 bits (76), Expect = 0.16
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 133 VDFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYLPLAFAIPP 192
V+F YYW H H L A + + + L G I + I
Sbjct: 138 VEFLYYWFHPVIHPFAELVAYELL--------FSIPLIACALTGTASIIAFEMYLIYIDF 189
Query: 193 AQFVVHHQFSYLYMFWIHTEAIKSLGPLEYILNTPSHHRVHHGSNKYCLDVNYGGVLIVW 252
+ H F L W+ T PL+Y++ TPS H +HH + NY + +
Sbjct: 190 MNNMGHCNFE-LVPSWLFTW----FPPLKYLMYTPSFHSLHHTQFR----TNYSLFMPFY 240
Query: 253 DRLFGTFKPETDKI 266
D ++ T +D +
Sbjct: 241 DYIYNTMDKSSDTL 254
>10_08_0816 +
20789399-20789728,20790098-20790420,20791437-20791584,
20791679-20791711,20791879-20791950
Length = 301
Score = 33.9 bits (74), Expect = 0.27
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 134 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYLPLAFAIPPA 193
D+ YW+HR H W ++H +F +G W + L + + PA
Sbjct: 138 DYLNYWIHRLLHGE---WGYEKIHRVHHEFTAPIGFAAPYAH-WAE-VLILGIPSFVGPA 192
Query: 194 QFVVHHQFSYLYMFWIHTEAIKSLGPLEYILNT---------PSHHRVHHGSNKYCLDVN 244
H +L++ EAI++ ++ N +H HH + N
Sbjct: 193 LAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTKYIPFYGGAEYHDYHHYVGRQS-QSN 251
Query: 245 YGGVLIVWDRLFGTFK 260
+ V D L+GT K
Sbjct: 252 FASVFTYCDYLYGTDK 267
>11_08_0095 -
28323425-28323494,28323577-28323657,28323744-28324157,
28324236-28324381,28325911-28326048,28326192-28326224
Length = 293
Score = 33.1 bits (72), Expect = 0.47
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 134 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGV 167
DF +YW HRA H + H VHH ++G+
Sbjct: 121 DFIFYWGHRALHTKWLYKHVHSVHHEYVMLHLGL 154
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 32.7 bits (71), Expect = 0.63
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 129 AALGVDFCYYWMHRACHEVHILWAQHQVHHTSED 162
AA+G++F W HRA LW H+ HH D
Sbjct: 132 AAVGMEFWARWAHRALWHAS-LWHMHESHHRPRD 164
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 32.7 bits (71), Expect = 0.63
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 129 AALGVDFCYYWMHRACHEVHILWAQHQVHHTSED 162
AA+G++F W HRA LW H+ HH D
Sbjct: 159 AAVGMEFWARWAHRALWHAS-LWHMHESHHRPRD 191
>02_04_0651 -
24737953-24738114,24738205-24738375,24738534-24738632,
24738738-24738938,24739234-24739341,24739531-24739810,
24739962-24740089
Length = 382
Score = 32.3 bits (70), Expect = 0.83
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 219 PLEYILNTPSHHRVHHGSNKYCLDVNYGGVLIVWDRLFGTFKPETDKI 266
PL+Y++ TPS H +HH + NY + +D ++ T +D++
Sbjct: 34 PLKYLIYTPSFHSLHHTQFR----TNYSLFMPFYDYIYNTMDKSSDEL 77
>02_01_0589 -
4355207-4355410,4355574-4355747,4356234-4356344,
4356506-4356712,4357609-4357716,4358442-4358698,
4359120-4359241,4359782-4360001,4360877-4361130,
4361782-4362015,4362143-4362189
Length = 645
Score = 31.9 bits (69), Expect = 1.1
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 19/158 (12%)
Query: 137 YYWMHRACHEVHILWAQHQVHH-TSEDFNMGVGIRQSVLQGWCGFIFYLPLAFA----IP 191
+YW HRA H + H HH S + G + + +PLA A +
Sbjct: 148 FYWAHRALHRAPLFSRYHAAHHHASVTTPLTAGFGTPLESLLLTVVIGVPLAGAFLMGVG 207
Query: 192 PAQFVVHHQ--FSYLY-MFWIHTEAI-----KSLGPLEYILNTPSHHRVHHGSNKYCLDV 243
V H F +L M + + E I +++ L Y++ TP++ +HH D
Sbjct: 208 SVGLVYGHVLLFDFLRSMGYSNVEVISPRVFQAVPLLRYLIYTPTYLSLHHREK----DS 263
Query: 244 NYGGVLIVWDRLFGTFKPETDKI--EIVYGLIYNQPSF 279
N+ + ++D L GT ++ ++ E+ G P F
Sbjct: 264 NFCLFMPIFDLLGGTLNHKSWELQKEVYLGKNDQAPDF 301
>02_05_0734 + 31318380-31318610,31319422-31319988
Length = 265
Score = 31.5 bits (68), Expect = 1.4
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
Query: 124 LTWYAAALGV-DFCYYWMHRACHEVHILWAQ-HQVHHTSE-DFNMGVGIRQSVLQGWCGF 180
L +A A+ V D Y+MHR H L+ H HHT ++ G + L+G
Sbjct: 96 LLQFAIAMFVMDTWQYFMHRYMHINKFLYKHIHSKHHTLVVPYSFGA-LYNHPLEGLILD 154
Query: 181 IFYLPLAFAIP---PAQFVVHHQFSYLYMFWIHTEAIKSLGPLEYILNTPS-HHRVHHG- 235
L+F + P + F+ + H L + N S +H +HH
Sbjct: 155 TIGGALSFLVSGMTPRTSIFFFSFATIKTVDDHCGLWLPGNILHALFNNNSAYHDIHHQL 214
Query: 236 -SNKYCLDVNYGGVLIVWDRLFGTFKP 261
NKY + ++WD++ GT+ P
Sbjct: 215 YGNKYNFSQPF---FVIWDKILGTYMP 238
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 31.1 bits (67), Expect = 1.9
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 124 LTWYAAALGVDFCYYWMHRACHEVHILWAQ-HQVHHTSEDFNMGVGIRQSVLQGWCGFIF 182
L + A +D Y+MHR H L+ H HHT + L+G
Sbjct: 96 LQFIIAMFVMDTWQYFMHRYMHVNKFLYKHVHSKHHTLVVPYAFGALYNHPLEGLILDTI 155
Query: 183 YLPLAFAIP---PAQFVVHHQFSYLYMFWIHTEAIKSLGPLE-YILNTPSHHRVHHG--S 236
L+F I P + F+ + H L + N ++H +HH
Sbjct: 156 GGALSFLIAGMTPKTAIFFFSFATIKTVDDHCGLWLPGNILHVFFSNNSAYHDIHHQLYG 215
Query: 237 NKYCLDVNYGGVLIVWDRLFGTFKPET 263
NKY + ++WD++ GT+ P T
Sbjct: 216 NKYNFSQPF---FVMWDKILGTYMPYT 239
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 129 AALGVDFCYYWMHRACHEVHILWAQHQVHHTSED 162
AA+G++F W HR+ LW H+ HH + +
Sbjct: 156 AAVGMEFWAQWAHRSLWHAS-LWHMHESHHRARE 188
>06_03_0177 -
17579474-17580109,17580549-17580626,17581160-17581309,
17581415-17581538,17583227-17583315,17583431-17583507,
17584413-17584822,17586203-17586216
Length = 525
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 208 WIHTEAIKSLGPLEYILNTPSHHRVHHGS--NKYCLDVN 244
W+H +K + PL Y+ + ++ + H S N++ LD++
Sbjct: 47 WLHGRRLKDIAPLIYLASKKKNNTLQHASTANQWLLDLD 85
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 352 HYAVVLYGFFELASRHMGMTPISVLIFVVYIIASLSVIGMLFDNSRHAPILEVL 405
H A+ +F + SRH TP L ++ A + IG+L++ S HA +++L
Sbjct: 966 HPAISKMLYFHVPSRHPSSTPELELPTLLQSAAVMG-IGLLYEGSAHALTMKIL 1018
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.142 0.470
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,800,972
Number of Sequences: 37544
Number of extensions: 607172
Number of successful extensions: 1333
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1316
Number of HSP's gapped (non-prelim): 25
length of query: 456
length of database: 14,793,348
effective HSP length: 84
effective length of query: 372
effective length of database: 11,639,652
effective search space: 4329950544
effective search space used: 4329950544
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -