GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002524-TA|BGIBMGA002524-PA|undefined
         (456 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...   260   1e-69
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical pr...    30   2.9  
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   5.1  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   5.1  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   5.1  
U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of ...    29   6.8  
AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative pota...    29   6.8  
Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical pr...    29   9.0  
Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical pr...    29   9.0  
L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score =  260 bits (637), Expect = 1e-69
 Identities = 138/422 (32%), Positives = 218/422 (51%), Gaps = 22/422 (5%)

Query: 6   FANASVENGFSDFVTDHLKGVGRLFYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEH 65
           F+N S+ +   D +T  L  +   FY+ SP ++  E  DDVPN+  +   ++ +F+  E 
Sbjct: 11  FSNTSLGHRLLDRLT--LTNLRHAFYLISPYETTVESIDDVPNYNAEVSAWWLVFLTAEF 68

Query: 66  IVLRLEG-KPGVRLNDGITSISHGIFQECGRIIWRGAESYLYTWIYTNYRLVELPWDSTL 124
            +L + G +    LND ITSI  G+  +C +   R    +LY  ++ N+R++ELPWDS  
Sbjct: 69  FILFISGHEDRFALNDSITSICAGMLSQCFKFGGRAVAIFLYVIVWDNWRILELPWDSPW 128

Query: 125 TWYAAALGVDFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYL 184
           TW       DF YY  HRA HE    W  H +HH+SE +N    +RQ+ +Q     I+  
Sbjct: 129 TWIFCLFFQDFMYYLGHRAVHEAGFFWGLHTIHHSSEYYNFSTALRQAAIQDAGLAIYDC 188

Query: 185 PLAFAIPPAQFVVHHQFSYLYMFWIHTEAIKSLGPLEYILNTPSHHRVHHGSNKYCLDVN 244
             AF IPP+ F+VH  FS ++ F +HT  + ++GPL  + NTPSHHRVHHG N YC+D N
Sbjct: 189 IQAFFIPPSIFLVHRYFSEIFQFIMHTSLVDTMGPLGLVFNTPSHHRVHHGRNPYCIDKN 248

Query: 245 YGGVLIVWDRLFGTFKPETDKIEIVYGLIYNQPSFNPLYLQ--SFYNGYVLEKFRS---- 298
           YGGV I+WD++F TF+ E      +YGL+ N+ +FN +YLQ  + ++  + + F      
Sbjct: 249 YGGVFIIWDKMFNTFEAERHDDPPIYGLVTNENTFNQIYLQFHALWDILIFKGFTKDVKG 308

Query: 299 ---YESWGDKMRAIFWGPSWEPGSP------RLGDEDMKVDVENREK----YDVHLPAWC 345
              +    +K++A  + P W PG P       +   +    V   EK    Y        
Sbjct: 309 EPMFPGVVNKLKATVFPPGWFPGVPVTPFFHWMSMVNPAHGVPEPEKPVLRYSPPARILV 368

Query: 346 NAYLVTHYAVVLYGFFELASRHMGMTPISVLIFVVYIIASLSVIGMLFDNSRHAPILEVL 405
             Y+ + + ++L  FF        ++ +   + + Y + ++   G  FD   +A  +E+ 
Sbjct: 369 KVYVASSFLLLLAIFFHFEYDRNHLSYLDCTVKIAYFVVTMQCFGAFFDMKWYARYIEIA 428

Query: 406 RC 407
           RC
Sbjct: 429 RC 430


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 131 LGVDFCYYWMHRACHEVHILWAQ-HQVHH 158
           L  DF Y+W H   H+V  L+   H VHH
Sbjct: 139 LAFDFTYFWFHYINHKVKWLYRWCHSVHH 167


>Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical
           protein C48B4.7 protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 369 GMTPISVLIFVVYIIASLSVIGMLFDNSRHAPILEVLRCSALAFLTRTITLTSPALGTTL 428
           G  PI + + +V +IA +    ML+ N     I+ V     L F   +        GT +
Sbjct: 19  GFFPIKLAVLLVQLIAIVIQFCMLYYNGNQEEIVFVAMVLLLVFTISSFVAFLGEYGTMM 78

Query: 429 QIFYVVSAM 437
            I Y VS +
Sbjct: 79  AIHYYVSCI 87


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 98  WRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYWMHR 142
           + G   Y+   IY  Y  +E  +DS + W+  ALGV  C+Y M R
Sbjct: 185 YSGTRPYMAPEIYATYLEIEDGYDSRVDWW--ALGV--CFYEMLR 225


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 30  FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 78
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 30  FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 78
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 30  FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 78
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of
           potassium channelsprotein 26 protein.
          Length = 519

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 333 NREKYDVHLPAWCNAYLVTHYAVVLYGFFELASRHMGMTP-ISVLIFVVYIIASLSVIGM 391
           NR+K ++ LP W   +LV  Y ++     ++   + G  P I       +   SL+ IG+
Sbjct: 263 NRKKNEILLPMWLALFLVLAYILICTLTIKMFDHNEGNKPGIGFFDAFYFTFISLTTIGL 322

Query: 392 ---LFDNSRHAPILEVLRCSALAFLT 414
              +  N +++P L       LA ++
Sbjct: 323 GDVMPYNIQYSPFLAAAFLLGLALIS 348


>AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative
           potassium channel subunitn2P26 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 333 NREKYDVHLPAWCNAYLVTHYAVVLYGFFELASRHMGMTP-ISVLIFVVYIIASLSVIGM 391
           NR+K ++ LP W   +LV  Y ++     ++   + G  P I       +   SL+ IG+
Sbjct: 228 NRKKNEILLPMWLALFLVLAYILICTLTIKMFDHNEGNKPGIGFFDAFYFTFISLTTIGL 287

Query: 392 ---LFDNSRHAPILEVLRCSALAFLT 414
              +  N +++P L       LA ++
Sbjct: 288 GDVMPYNIQYSPFLAAAFLLGLALIS 313


>Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical
           protein T27A8.5 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 380 VYIIASLSVIGMLFDNSRHAPILEVLRCSALAFLTRTITLTSPALGTTLQ 429
           V ++A   V   +F NS+ +   +   C+AL ++  TI   S    TT++
Sbjct: 352 VVVVALAMVANKMFTNSKSSGQFDTHMCAALKYILNTINYLSDKRYTTIK 401


>Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical
           protein ZC506.1 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 14/95 (14%)

Query: 138 YWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYLPLAFAIPPAQ--- 194
           Y+++RA  + H L    Q+    +  N  V +        CGF     +   +   Q   
Sbjct: 386 YFLYRATKDPHYLHVAKQI---MDSINKYVKVP-------CGFAALKDIRTMVKEDQMES 435

Query: 195 FVVHHQFSYLYMFWIHTEAIKSLGPLEYILNTPSH 229
           FV+   F YLYM +   E +    P  Y+L T +H
Sbjct: 436 FVLSETFKYLYMIFTDPEDL-MFDPDHYVLTTEAH 469


>L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical
           protein K12H4.7b protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 240 CLDVNYGGVL-IVWDRLFGTFKPETDKIEIVYGLIYNQPSFNPL--YLQSFYNG 290
           C D++Y G +  + D  FG  +   D+   +YG  YN         Y   +Y G
Sbjct: 345 CNDIDYNGFISFMKDETFGEAQYYIDECTAIYGAAYNSQEVQTSVDYTNQYYGG 398


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.142    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,456
Number of Sequences: 27539
Number of extensions: 537542
Number of successful extensions: 1494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 14
length of query: 456
length of database: 12,573,161
effective HSP length: 84
effective length of query: 372
effective length of database: 10,259,885
effective search space: 3816677220
effective search space used: 3816677220
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)