GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002524-TA|BGIBMGA002524-PA|undefined
         (456 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   2.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   2.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   7.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   7.0  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   9.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   9.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 110 YTNYRLVELPWDSTLTWYAAALGVDFCYYWM 140
           +  YR +  P D  L    AA+ + F ++W+
Sbjct: 152 FDRYRTISCPIDGRLNSKQAAVIIAFTWFWV 182


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 110 YTNYRLVELPWDSTLTWYAAALGVDFCYYWM 140
           +  YR +  P D  L    AA+ + F ++W+
Sbjct: 152 FDRYRTISCPIDGRLNSKQAAVIIAFTWFWV 182


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 181 IFYLPLAFAIPPAQFVVHHQFSYLY--MFWIHTEAIKSLGPLEYILNTPSHHRV 232
           +F+L LA  IPP    V     YL   M  +    + ++  L     +P  HR+
Sbjct: 280 VFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRM 333


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 261 PETDKIEIVYGLIYNQPSFNPLYLQSFYNGYVLEKFRSYESWGDKMRAIFWGPSWEPG 318
           P+ +K    + + +N P+F   +        V EK+   ++W DK R       ++PG
Sbjct: 34  PDNNKTVREFNVYWNVPTFM-CHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPG 90


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/52 (19%), Positives = 25/52 (48%)

Query: 405 LRCSALAFLTRTITLTSPALGTTLQIFYVVSAMFWCLNMLKLLEIKKTRKVD 456
           +R S++ FLTR    T       + +F++    ++ +++   ++     K+D
Sbjct: 243 IRRSSIGFLTRAKIRTLKMTVIIIAVFFICWTPYYVMSLWYWIDRNSAYKID 294


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 339 VHLPAWCNAYLVTHYAVVLYGFFELASRHMGMTPISVLIF 378
           + LP +C   ++ HY   L   F+LA     M  + VL F
Sbjct: 24  IQLP-FCGPNVIDHYFRDLQPLFKLACTDTFMEGVIVLAF 62


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 347 AYLVTHYAVVLYGFFELASRHMGMTPISVLIFVVYIIASLSV-----IGMLFDNSRHAPI 401
           A+ V  Y  + + F       +    +  +I +  +   L+V      G++++N   + I
Sbjct: 147 AFTVERYIAICHPFISHTMSKLSRA-VKFIIVIWLLALCLAVPQAIQFGVVYENKNGSVI 205

Query: 402 LEVLRCS 408
           L+  RCS
Sbjct: 206 LDTARCS 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.142    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,269
Number of Sequences: 429
Number of extensions: 6390
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 456
length of database: 140,377
effective HSP length: 60
effective length of query: 396
effective length of database: 114,637
effective search space: 45396252
effective search space used: 45396252
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)