Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002523-TA|BGIBMGA002523-PA|undefined
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo... 31 0.12
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 31 0.21
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 30 0.27
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 30 0.36
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.63
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 28 1.1
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 28 1.5
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.9
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 5.9
>SPCC24B10.13 |skb5||Shk1 kinase binding protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 57 EREEDRIVYGLIYQQPSFNPLHLQTYYTRYVMQKYKSF--DSWKHKLQAVLDRPSWKPGN 114
E EED +V G Y P + LH ++ R + ++ + F D++ ++ D S +
Sbjct: 4 ETEEDYLVVGRDYLYPPDHELH-YGFHARVIEEEEERFVDDTFDETIEGSDDSES--IDD 60
Query: 115 TIRFRDMEEDPAIHAQVKYNVI 136
T F D EE + H +NV+
Sbjct: 61 TEVFYDAEESESTHPSASFNVL 82
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 50 LFGTFRAEREEDRIVYG-LIYQQPSFNPLHLQTYYTRYVMQKYKSFDSWKHKLQAVLDRP 108
L+ + RA E + Y L P + H+++ R D H + +V
Sbjct: 47 LYSSARASIEGEEAFYQHLSTPDPGNDSGHVRSSNDRIPSTSSNHADG--HHVDSVFSNL 104
Query: 109 SWKPGNTIRFRDMEEDPAIHAQVKYNVILPKWCTAYLLTHYG 150
S KP ++EE+P + Q + P W T ++ YG
Sbjct: 105 SAKPTVESNTEELEEEPPSYEQAAADTAPPYWDTTMVIPDYG 146
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 16 EYILNTPS-HHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAERE 59
+YI N P + HH + + NYG L+D+L +FRA E
Sbjct: 211 KYISNNPIINGAAHHNGHHIYFNYNYGQFTTLFDRLGNSFRAPDE 255
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 29.9 bits (64), Expect = 0.36
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 14 PLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREEDRIVYGLIYQQPS 73
P++ I + I + YC VN G +++ DKL + E ++ I+ Y +
Sbjct: 2386 PIQTIAVNARNAEIAFSTGFYCCVVNVNGKILVKDKLSRIYN-ENSDENILCSCFYTGAN 2444
Query: 74 FNPLHLQTYYTRY---VMQKYKSFDSWKHKLQAV---LDRPSWK 111
LH + T + +++ ++ KL+A DRP W+
Sbjct: 2445 SEWLHKNLFITGHPDGIIRIWEKRLQSNAKLEAEKNNADRPKWR 2488
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 112 PGNTIRFRDMEEDPAIHAQVKYN---VILPKWCTAYLLTHYGLILYGFHQLFLYNS 164
PG + + D + DP + A + YN ++ KW YL +++ L + +YNS
Sbjct: 1177 PGFRLYWSDEQNDPDLSAVLPYNKFVLLFSKW-HKYLTSYFESCLLSTEYMHIYNS 1231
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 18 ILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREE 60
++N +HH HH Y NYG L+D+L ++R +E
Sbjct: 251 VVNGAAHHAAHHMYFNY----NYGQFFTLFDRLCSSYRQPDQE 289
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 72 PSFNPLHLQTYYTRYVMQKYKSFDSWKHKLQAVLDRPSW 110
P ++ + + Y+ YV +Y+S D W L+ +D PS+
Sbjct: 264 PIYSFIQERKYFLSYVENRYQSLDCWNKFLEKEID-PSF 301
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 4 IHTETIKSLGPLEYILNTPSHHRIHHGSNPYCIDVNYGGVL 44
I E++ SL N+PSH+ IH +P+ D + G ++
Sbjct: 380 IQNESLDSLNSSSN--NSPSHNNIHSRQHPFSSDEDEGNIV 418
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 58 REEDRIVYGLIYQQPSFNPLHLQTYYTRYVMQKYKSFDSWKHKLQAVLDR--PSWKPGNT 115
+++ ++ +G+ Q+ P+H Q Y D K +L +D+ W G
Sbjct: 56 QKKGQLKHGVSRQKNKLQPIHKQINYET---------DKLKERLGKSIDKFQEQWNSGKV 106
Query: 116 IRFRD 120
+RFRD
Sbjct: 107 VRFRD 111
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.142 0.462
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,934
Number of Sequences: 5004
Number of extensions: 48663
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 2,362,478
effective HSP length: 71
effective length of query: 176
effective length of database: 2,007,194
effective search space: 353266144
effective search space used: 353266144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)
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