Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002523-TA|BGIBMGA002523-PA|undefined
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 33 0.16
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392... 33 0.22
02_04_0651 - 24737953-24738114,24738205-24738375,24738534-247386... 31 1.1
06_03_0177 - 17579474-17580109,17580549-17580626,17581160-175813... 30 2.0
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 29 2.7
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 3.5
01_06_1191 - 35297005-35297473,35297812-35298965 29 4.6
01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987 28 6.1
06_01_0867 - 6600847-6601413,6601954-6602181 28 8.1
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402 28 8.1
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 14 PLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREE 60
PL+Y+L TPS H +HH NY + ++D ++GT +E
Sbjct: 238 PLKYLLYTPSFHSLHHTQ----FRTNYSLFMPVYDYIYGTTDKSSDE 280
>09_04_0189 +
15438538-15438591,15438671-15438891,15438982-15439214,
15439322-15439541,15440091-15440212,15441086-15441339,
15441425-15441532,15441622-15441828,15441929-15442213,
15442312-15442467
Length = 619
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 10 KSLGPLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREE 60
+SL L+Y++ TP++H IHH D N+ + L+D + GT A+ E
Sbjct: 230 QSLPVLKYLIYTPTYHTIHHTKE----DANFCLFMPLFDLIGGTLDAQSWE 276
>02_04_0651 -
24737953-24738114,24738205-24738375,24738534-24738632,
24738738-24738938,24739234-24739341,24739531-24739810,
24739962-24740089
Length = 382
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 14 PLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREE 60
PL+Y++ TPS H +HH NY + +D ++ T +E
Sbjct: 34 PLKYLIYTPSFHSLHHTQ----FRTNYSLFMPFYDYIYNTMDKSSDE 76
>06_03_0177 -
17579474-17580109,17580549-17580626,17581160-17581309,
17581415-17581538,17583227-17583315,17583431-17583507,
17584413-17584822,17586203-17586216
Length = 525
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 3 WIHTETIKSLGPLEYILNTPSHHRIHHGS--NPYCIDV----NYGGVLILWDKLFGTFRA 56
W+H +K + PL Y+ + ++ + H S N + +D+ N G L +L + A
Sbjct: 47 WLHGRRLKDIAPLIYLASKKKNNTLQHASTANQWLLDLDLPTNVGWTTDLISQLISVWSA 106
Query: 57 -------EREEDRIVY 65
E+E+D+IV+
Sbjct: 107 VHTVQLVEQEKDKIVW 122
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 14 PLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGT 53
PL+Y++ TPS H +HH NY + +D ++ T
Sbjct: 211 PLKYLMYTPSFHSLHHTQ----FRTNYSLFMPFYDYIYNT 246
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 6 TETIKSLGPLEYILNTPSHHRIHHGSNPYCIDVNYGGVLILWDKLFGTFRAEREEDRIVY 65
TE ++ LE I+ P H+R H S+ + + G+ L AE +ED ++
Sbjct: 51 TEMMRLTAKLEQIIGRPPHNRAHLPSHAFA--PSKSGLATAIQALDWGTDAEEDEDDVIA 108
Query: 66 GLIYQQ--PSFNP 76
++Q+ +FNP
Sbjct: 109 PELHQRSAETFNP 121
>01_06_1191 - 35297005-35297473,35297812-35298965
Length = 540
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 137 LPKWCTAYLLTHYGLILYGFHQLFLYNSEL 166
LP W A++ +GL+ YG +FL +S L
Sbjct: 70 LPLWVVAFVGAAFGLVGYGIQYMFLDSSGL 99
>01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987
Length = 342
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 98 KHKLQAVLDRPSWKPGNTIRFRDMEED 124
K Q VL +P WK GN I F M ++
Sbjct: 197 KEVSQMVLVKPGWKKGNKITFEGMGDE 223
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 17 YILNTPSHHRIHHG--SNPYCIDVNYGGVLILWDKLFGTFRAEREEDR 62
+ N ++H IHH N Y + ++WDK+ GT+ E+R
Sbjct: 199 FFSNNSAYHDIHHQLYGNKYNFSQPF---FVMWDKILGTYMPYTLENR 243
>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
Length = 346
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 37 DVNYGGVLILWDKLFGTFRAEREEDRIVYGLIYQQPSFNPLHLQTYYTRYVMQK 90
D NY + W++ + ER++D Y + P F L Q YY + K
Sbjct: 79 DPNYHRRVTRWNRKWTEVEKERKKDPYKYQQLSTDPRFWNLFQQDYYETVIAPK 132
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.142 0.462
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,850,483
Number of Sequences: 37544
Number of extensions: 272479
Number of successful extensions: 628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 10
length of query: 247
length of database: 14,793,348
effective HSP length: 80
effective length of query: 167
effective length of database: 11,789,828
effective search space: 1968901276
effective search space used: 1968901276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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